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89 Open 207 Closed
89 Open 207 Closed
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Issues list

Add new snakemake workflows AnalysisTools
#473 opened Aug 14, 2024 by adamcantor22 0.9.0
Make full use of MongoDB for file storage Database Database related enhancement
#470 opened Jun 26, 2024 by adamcantor22 0.13.0
Add RandomForest, Lasso, and/or other classifiers to analysis AnalysisTools enhancement
#468 opened Mar 20, 2024 by adamcantor22 0.9.0
Enable use in analysis of the ICD code breakdown by parts that is present in database Database Database related Metadata Relating to the generation, checking, or format of metadata
#467 opened Mar 8, 2024 by adamcantor22 0.10.0
clarify the structure of analysis directories AnalysisTools enhancement
#466 opened Feb 28, 2024 by adamcantor22 0.9.0
1
mismatch read in strip_error_barcodes bug good first issue high priority
#465 opened Feb 21, 2024 by adamcantor22 0.10.0
@adamcantor22
Generate and store sequencing run Qiime artifact immediately after run upload AnalysisTools enhancement Server Issue relates to the server
#464 opened Jan 18, 2024 by adamcantor22
Additional metadata columns of the same name in subject and specimen files silently fail bug good first issue high priority
#463 opened Jan 17, 2024 by adamcantor22 0.10.0
@adamcantor22
Nonstandard dual-barcode lengths break pheniqs bug good first issue high priority
#462 opened Dec 8, 2023 by adamcantor22 0.10.0
@adamcantor22
Allow users to login using email instead of username good first issue webUI
#460 opened Aug 29, 2023 by adamcantor22 1.0.0
Filter out contaminants as default AnalysisTools
#459 opened Aug 11, 2023 by adamcantor22
Migrate "Tools" framework to snakemake workflows AnalysisTools enhancement meta issue issue to be broken down into component issues and then linked to this one
#457 opened May 30, 2023 by cleme 0.9.0
1
2
Organize minerva studies by user housekeeping General improvements that don't enhance functionality On Hold This issue is ongoing, but is not currently planned for any release Server Issue relates to the server
#455 opened Apr 5, 2023 by adamcantor22
1
Fix config examples good first issue webUI
#454 opened Apr 5, 2023 by adamcantor22 0.11.0
Update user docs good first issue webUI
#453 opened Apr 5, 2023 by adamcantor22 0.11.0
Standardize drug names Metadata Relating to the generation, checking, or format of metadata
#452 opened Mar 22, 2023 by jakleenlee
Metadata subclasses and conversion Metadata Relating to the generation, checking, or format of metadata
#451 opened Feb 10, 2023 by adamcantor22 0.10.0
2
define metadata ontologies Database Database related Metadata Relating to the generation, checking, or format of metadata
#450 opened Jan 23, 2023 by adamcantor22 0.10.0
expand options in analysis tool configurations AnalysisTools enhancement
#449 opened Jan 17, 2023 by adamcantor22 0.9.0
1
Improved summaries: refactor summary code out of generated jupyter notebooks into MMEDs and improve summary code overall housekeeping General improvements that don't enhance functionality
#447 opened Dec 12, 2022 by mstapylton 0.11.0
@mstapylton
Consider adding UMAP analysis AnalysisTools enhancement Summaries Relating to summary generation
#444 opened Nov 17, 2022 by cleme 0.10.5
1
Add rPCA analysis AnalysisTools enhancement On Hold This issue is ongoing, but is not currently planned for any release Summaries Relating to summary generation
#443 opened Nov 17, 2022 by cleme
Studies with mixed data types enhancement meta issue issue to be broken down into component issues and then linked to this one
#442 opened Nov 11, 2022 by cleme 0.10.5
Adding studies MMEDS housekeeping General improvements that don't enhance functionality meta issue issue to be broken down into component issues and then linked to this one
#441 opened Nov 11, 2022 by cleme 0.10.0
Re-establish a way to auto-submit jobs on the server bug Security This issue addresses a security concern Server Issue relates to the server
#440 opened Nov 8, 2022 by adamcantor22 0.10.0
1
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