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Description

This repository contains "silver" biomolecular event mentions mined from the full text of a subset of PubMed Central publications using Reach (commit d6a84be099a155b2bedb69f2102493d5db9399fb). A portion of this data was used to supplement the training of edin.

Rules

rules.yml contains the Odin rules referenced in the event json data.

Events

File	Event
ph_events.jsonl	Phosphorylation
lo_events.jsonl	Localization
ge_events.jsonl	Gene Expression

Structure

Each .jsonl is a JSON lines file contains a list of JSON objects where each object represents an event mention in the schema defined in oas3-data-schema.yml. Click this link to render the schema in an editor.

Quick view

This command will pretty print the first gene expression event listed in ge_events.jsonl:

head -n 1 ge_events.jsonl | python -m json.tool