Color gradient

[carrere]

Is there also any way to choose Colors for density display (instead of the red to blue gradient)?

[cmdcolin]

I think you can use pos_color and neg_color, as well as the bicolor_pivot value which is the value that is chosen to switch from "red to blue"

http://gmod.org/wiki/JBrowse_Configuration_Guide

I haven't tested that very much but I believe this works well for the MultiDensity track type

[cmdcolin]

It inherits from some of the default bigwig configs http://gmod.org/wiki/JBrowse_Configuration_Guide#Example_BigWig-based_Wiggle_Color_Density_Track_Configuration

[carrere]

Ok, I'll test tomorrow and send you feedback.
Thanks again for this really usefull plugin!

Seb
Le 25 mai 2016 20:37, "Colin Diesh" notifications@github.com a écrit :

It inherits from some of the default bigwig configs
http://gmod.org/wiki/JBrowse_Configuration_Guide#Example_BigWig-based_Wiggle_Color_Density_Track_Configuration

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#3 (comment)

[carrere]

Thanks, it's working !

Le 25/05/2016 20:37, Colin Diesh a écrit :

I think you can use pos_color and neg_color, as well as the
bicolor_pivot value which is the value that is chosen to switch from
"red to blue"

http://gmod.org/wiki/JBrowse_Configuration_Guide

I haven't tested that very much but I believe this works well for the
MultiDensity track type

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#3 (comment)

[cmdcolin]

Sweet :) Close for now