Merge origin/pierre into new-feature

cmongis · May 25, 2016 · e2961f1 · e2961f1
2 parents 6fc2c04 + 8579c58
commit e2961f1
Showing 1 changed file with 53 additions and 4 deletions.
diff --git a/src/main/java/ijfx/service/overlay/OverlayStatCommandTester.java b/src/main/java/ijfx/service/overlay/OverlayStatCommandTester.java
@@ -19,15 +19,24 @@
  */
 package ijfx.service.overlay;
 
+import ijfx.plugins.commands.BinaryToOverlay;
+import ijfx.service.batch.BatchSingleInput;
+import ijfx.service.batch.ImageDisplayBatchInput;
+import java.util.Arrays;
+import java.util.HashMap;
+import java.util.List;
+import java.util.stream.Collectors;
 import net.imagej.display.ImageDisplay;
 import net.imagej.display.ImageDisplayService;
 import net.imagej.display.OverlayService;
 import net.imagej.overlay.Overlay;
-import org.scijava.SciJava;
+import net.imagej.table.DefaultGenericTable;
+import org.scijava.Context;
 
 import org.scijava.command.Command;
 import org.scijava.plugin.Parameter;
 import org.scijava.plugin.Plugin;
+import org.scijava.ui.UIService;
 
 /**
  *
@@ -46,12 +55,52 @@ public class OverlayStatCommandTester implements Command{
     @Parameter
     OverlayStatService overlayStatService;
 
+    @Parameter
+    Context context;
+
+    @Parameter
+    private UIService uiService;    
+
 
     @Override
     public void run(){
         ImageDisplay display = imageDisplayService.getActiveImageDisplay();
-        Overlay overlay = overlayService.getActiveOverlay(display);
-        OverlayStatistics overlayStatistics = overlayStatService.getOverlayStatistics(display, overlay);
-        System.out.println(overlayStatistics.toString());
+
+        List<Overlay> overlay = overlayService.getOverlays();
+
+        overlayService.addOverlays(display, overlay);
+
+        List<HashMap<String, Double>> map = overlay.stream()
+                .map(o -> {
+                    try {
+
+                        return overlayStatService.getStatistics(overlayStatService.getOverlayStatistics(display, o));
+                    } catch (Exception e) {
+                        return null;
+                    }
+                })
+                .filter(o -> o != null)
+                .collect(Collectors.toList());
+
+        DefaultGenericTable resultTable = new DefaultGenericTable();
+        if (map.size() > 0) {
+            int headerNumber = map.get(0).keySet().size();
+
+            String[] headers = map.get(0).keySet().toArray(new String[headerNumber]);
+            resultTable.insertColumns(0, headers);
+
+            for (int rowNumber = 0; rowNumber != map.size(); rowNumber++) {
+                final int finalRowNumber = rowNumber;
+                resultTable.insertRow(finalRowNumber);
+                map.get(rowNumber).forEach((key, value) -> {
+                    System.out.println(String.format("Setting the value %s to %.3f (%d)", key, value, finalRowNumber));
+
+                    resultTable.set(key, finalRowNumber, value);
+                });
+            }
+
+        }
+
+        uiService.show(resultTable);        
     }
 }