Flu inpatient

[bwilder0]

Description

Add a new signal for flu inpatient. This combines two new files from CHNG. The numerator is a count of new inpatient admissions with ICD code J09*-J11*. The denominator is the number of new inpatient admissions. Inpatient claims are identified by looking for both the presence of an admission date and the claim type + bill code matching an inpatient setting. The ratio is smoothed/adjusted in the same way as other CHNG signals.

Changelog

Itemize code/test/documentation changes and files added/removed.

• load_data.py was changed to load the data for the new signal (the function load_flu_inpatient_data)
• Small changes were made throughout run.py and update_sensor.py to accommodate the fact that this signal's base geography is the state level, not county. Several places had a hardcoded assertion that the base geography was 'fips'. This has been changed to permit 'state_code' when processing the flu inpatient signal.
• Tests were updated both to pass in the base geography explicitly (as is now required) and to test load_flu_inpatient_data

[bwilder0]

Not sure why the linter is crashing at the very end...I'll take a look tomorrow but any suggestions are appreciated

[qx-teo]

Looks like the crash is due to something on a PR I submitted, lemme look into it!

[rumackaaron]

@bwilder0 If you merge in the changes mentioned by @qx-teo do all of the checks pass?

[bwilder0]

Hm looks like the same thing is still happening after merging the changes. @qx-teo, any thoughts on what might be happening here?

[qx-teo]

There was a failing test in _delphi_utils_python that is fixed by the merge, I'm not too sure what's causing the linter issue in changehc but that's probably not related to the issue I was talking about in my earlier comment.

Seems like the usual pylint complaints for the most part, although I've never seen the R1714 error.

[krivard]

@bwilder0 the commands you want are
make lint
and
make test

more information is in the default README.md file for each indicator.

[krivard]

👍

[krivard]

before merging, we should commit to writing API documentation for these new signals