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1. protein_set_transformer protein_set_transformer Public

   Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

   Jupyter Notebook 1 3

2. lightning-crossval lightning-crossval Public

   Cross validation with Lightning Fabric

   Python 3

3. pydantic-argparse pydantic-argparse Public

   Forked from SupImDos/pydantic-argparse

   Typed Argument Parsing with Pydantic

   Python 2 2

4. metapyrodigal metapyrodigal Public

   Using pyrodigal for orf prediction for large volumes of metagenomic sequences efficiently

   Python