Rebuild for r-base-3.6.1

.azure-pipelines/azure-pipelines-linux.yml

@@ -10,15 +10,15 @@ jobs:
   strategy:
     maxParallel: 8
     matrix:
-      linux_target_platformlinux-64:
-        CONFIG: linux_target_platformlinux-64
+      linux_r_base3.5.1target_platformlinux-64:
+        CONFIG: linux_r_base3.5.1target_platformlinux-64
         UPLOAD_PACKAGES: True
+        DOCKER_IMAGE: condaforge/linux-anvil-comp7
+      linux_r_base3.6target_platformlinux-64:
+        CONFIG: linux_r_base3.6target_platformlinux-64
+        UPLOAD_PACKAGES: True
+        DOCKER_IMAGE: condaforge/linux-anvil-comp7
   steps:
-  - script: |
-      sudo pip install --upgrade pip
-      sudo pip install setuptools shyaml
-    displayName: Install dependencies
-
   # configure qemu binfmt-misc running.  This allows us to run docker containers
   # embedded qemu-static
   - script: |
@@ -27,7 +27,9 @@ jobs:
     condition: not(startsWith(variables['CONFIG'], 'linux_64'))
     displayName: Configure binfmt_misc
 
-  - script: .azure-pipelines/run_docker_build.sh
+  - script: |
+        export CI=azure
+        .azure-pipelines/run_docker_build.sh
     displayName: Run docker build
     env:
       BINSTAR_TOKEN: $(BINSTAR_TOKEN)

.azure-pipelines/build_steps.sh

@@ -7,15 +7,15 @@
 
 set -xeuo pipefail
 export PYTHONUNBUFFERED=1
-export FEEDSTOCK_ROOT=/home/conda/feedstock_root
-export RECIPE_ROOT=/home/conda/recipe_root
-export CI_SUPPORT=/home/conda/feedstock_root/.ci_support
+export FEEDSTOCK_ROOT="${FEEDSTOCK_ROOT:-/home/conda/feedstock_root}"
+export RECIPE_ROOT="${RECIPE_ROOT:-/home/conda/recipe_root}"
+export CI_SUPPORT="${FEEDSTOCK_ROOT}/.ci_support"
 export CONFIG_FILE="${CI_SUPPORT}/${CONFIG}.yaml"
 
 cat >~/.condarc <<CONDARC
 
 conda-build:
- root-dir: /home/conda/feedstock_root/build_artifacts
+ root-dir: ${FEEDSTOCK_ROOT}/build_artifacts
 
 CONDARC
 
@@ -24,7 +24,8 @@ conda install --yes --quiet conda-forge-ci-setup=2 conda-build -c conda-forge
 # set up the condarc
 setup_conda_rc "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 
-run_conda_forge_build_setup
+source run_conda_forge_build_setup
+
 # make the build number clobber
 make_build_number "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 
@@ -35,4 +36,4 @@ if [[ "${UPLOAD_PACKAGES}" != "False" ]]; then
     upload_package "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 fi
 
-touch "/home/conda/feedstock_root/build_artifacts/conda-forge-build-done-${CONFIG}"
+touch "${FEEDSTOCK_ROOT}/build_artifacts/conda-forge-build-done-${CONFIG}"

.azure-pipelines/run_docker_build.sh

@@ -39,7 +39,7 @@ if [ -z "$CONFIG" ]; then
 fi
 
 if [ -z "${DOCKER_IMAGE}" ]; then
-    SHYAML_INSTALLED="$(shyaml --version || echo NO)"
+    SHYAML_INSTALLED="$(shyaml -h || echo NO)"
     if [ "${SHYAML_INSTALLED}" == "NO" ]; then
         echo "WARNING: DOCKER_IMAGE variable not set and shyaml not installed. Falling back to condaforge/linux-anvil-comp7"
         DOCKER_IMAGE="condaforge/linux-anvil-comp7"
@@ -51,8 +51,10 @@ fi
 mkdir -p "$ARTIFACTS"
 DONE_CANARY="$ARTIFACTS/conda-forge-build-done-${CONFIG}"
 rm -f "$DONE_CANARY"
-# Not all providers run with a real tty.  Disable using one
-DOCKER_RUN_ARGS=" "
+
+if [ -z "${CI}" ]; then
+    DOCKER_RUN_ARGS="-it "
+fi
 
 export UPLOAD_PACKAGES="${UPLOAD_PACKAGES:-True}"
 docker run ${DOCKER_RUN_ARGS} \
@@ -62,6 +64,7 @@ docker run ${DOCKER_RUN_ARGS} \
            -e BINSTAR_TOKEN \
            -e HOST_USER_ID \
            -e UPLOAD_PACKAGES \
+           -e CI \
            $DOCKER_IMAGE \
            bash \
            /home/conda/feedstock_root/${PROVIDER_DIR}/build_steps.sh

.ci_support/linux_target_platformlinux-64.yaml → .ci_support/linux_r_base3.5.1target_platformlinux-64.yaml

@@ -1,5 +1,3 @@
-build_number_decrement:
-- '0'
 channel_sources:
 - conda-forge,defaults
 channel_targets:
@@ -10,7 +8,8 @@ docker_image:
 - condaforge/linux-anvil-comp7
 pin_run_as_build:
   r-base:
-    max_pin: x.x.x
+    min_pin: x.x
+    max_pin: x.x
 r_base:
 - 3.5.1
 target_platform:

.ci_support/linux_r_base3.6target_platformlinux-64.yaml

@@ -0,0 +1,16 @@
+channel_sources:
+- conda-forge,defaults
+channel_targets:
+- conda-forge main
+cran_mirror:
+- https://cran.r-project.org
+docker_image:
+- condaforge/linux-anvil-comp7
+pin_run_as_build:
+  r-base:
+    min_pin: x.x
+    max_pin: x.x
+r_base:
+- '3.6'
+target_platform:
+- linux-64

.github/CODEOWNERS

@@ -0,0 +1 @@
+* @conda-forge/r

README.md

@@ -15,9 +15,7 @@ Current build status
 ====================
 
 
-<table><tr>
-
-    <td>All platforms:</td>
+<table><tr><td>All platforms:</td>
     <td>
       <a href="https://dev.azure.com/conda-forge/feedstock-builds/_build/latest?definitionId=3375&branchName=master">
         <img src="https://dev.azure.com/conda-forge/feedstock-builds/_apis/build/status/r-genetics-feedstock?branchName=master">

build-locally.py

@@ -0,0 +1,58 @@
+#!/usr/bin/env python3
+#
+# This file has been generated by conda-smithy in order to build the recipe
+# locally.
+#
+import os
+import glob
+import subprocess
+from argparse import ArgumentParser
+
+
+def setup_environment(ns):
+    os.environ["CONFIG"] = ns.config
+    os.environ["UPLOAD_PACKAGES"] = "False"
+
+
+def run_docker_build(ns):
+    script = glob.glob(".*/run_docker_build.sh")[0]
+    subprocess.check_call(script)
+
+def verify_config(ns):
+    valid_configs = {os.path.basename(f)[:-5] for f in glob.glob(".ci_support/*.yaml")}
+    print(f"valid configs are {valid_configs}")
+    if ns.config in valid_configs:
+        print("Using " + ns.config + " configuration")
+        return
+    elif len(valid_configs) == 1:
+        ns.config = valid_configs.pop()
+        print("Found " + ns.config + " configuration")
+    elif ns.config is None:
+        print("config not selected, please choose from the following:\n")
+        selections = list(enumerate(sorted(valid_configs), 1))
+        for i, c in selections:
+            print(f"{i}. {c}")
+        s = input("\n> ")
+        idx = int(s) - 1
+        ns.config = selections[idx][1]
+        print(f"selected {ns.config}")
+    else:
+        raise ValueError("config " + ns.config + " is not valid")
+    # Remove the following, as implemented
+    if not ns.config.startswith('linux'):
+        raise ValueError(f"only Linux configs currently supported, got {ns.config}")
+
+
+def main(args=None):
+    p = ArgumentParser("build-locally")
+    p.add_argument("config", default=None, nargs="?")
+
+    ns = p.parse_args(args=args)
+    verify_config(ns)
+    setup_environment(ns)
+
+    run_docker_build(ns)
+
+
+if __name__ == "__main__":
+    main()

conda-forge.yml

@@ -3,5 +3,6 @@ appveyor:
 compiler_stack: comp7
 max_py_ver: '37'
 max_r_ver: '35'
+provider: {win: azure}
 travis:
   secure: {BINSTAR_TOKEN: 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}

recipe/meta.yaml

@@ -14,7 +14,7 @@ source:
 
 build:
   merge_build_host: True  # [win]
-  number: 0
+  number: 1
   noarch: generic
   rpaths:
     - lib/R/lib/