conda-forge · scopatz · Dec 27, 2018 · Dec 7, 2018 · Dec 7, 2018 · Dec 7, 2018
diff --git a/recipes/namaster/Makefile.am.patch b/recipes/namaster/Makefile.am.patch
@@ -0,0 +1,24 @@
+diff --git a/Makefile.am b/Makefile.am
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -3,17 +3,17 @@ EXTRA_DIST = doc README.md
+ lib_LTLIBRARIES = libnmt.la
+ libnmt_la_SOURCES = src/utils.c src/flatsky_utils.c src/healpix_extra.c src/nmt_bins.c src/nmt_bins_flat.c src/nmt_field.c src/nmt_field_flat.c src/nmt_mask.c src/nmt_mask_flat.c src/nmt_master.c src/nmt_covar.c src/nmt_master_flat.c src/nmt_covar_flat.c
+ libnmt_la_CPPFLAGS = $(OPENMP_CFLAGS) -I./src/
+-libnmt_la_LDFLAGS = $(OPENP_CFLAGS) -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++libnmt_la_LDFLAGS = $(OPENP_CFLAGS) -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
+
+ include_HEADERS = src/namaster.h
+
+ bin_PROGRAMS = namaster
+ namaster_SOURCES = src/nmt_main.c
+ namaster_CPPFLAGS = $(OPENMP_CFLAGS) -I./src/
+-namaster_LDFLAGS = $(OPENMP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++namaster_LDFLAGS = $(OPENMP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
+
+ noinst_PROGRAMS = test/check_nmt
+ TESTS = test/check_nmt
+ test_check_nmt_SOURCES = test/nmt_test.c test/nmt_test_utils.c test/nmt_test_fsk.c test/nmt_test_hpex.c test/nmt_test_bins.c test/nmt_test_field.c test/nmt_test_master.c test/nmt_test_covar.c test/nmt_test_bins_flat.c test/nmt_test_field_flat.c test/nmt_test_master_flat.c test/nmt_test_covar_flat.c test/nmt_test_mask.c
+ test_check_nmt_CPPFLAGS = $(OPENMP_CFLAGS) -I./test/ -I./src/
+-test_check_nmt_LDFLAGS = $(OPENP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++test_check_nmt_LDFLAGS = $(OPENP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
diff --git a/recipes/namaster/Makefile.in.patch b/recipes/namaster/Makefile.in.patch
@@ -0,0 +1,20 @@
+diff --git a/Makefile.in b/Makefile.in
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -410,14 +410,14 @@ EXTRA_DIST = doc README.md
+ lib_LTLIBRARIES = libnmt.la
+ libnmt_la_SOURCES = src/utils.c src/flatsky_utils.c src/healpix_extra.c src/nmt_bins.c src/nmt_bins_flat.c src/nmt_field.c src/nmt_field_flat.c src/nmt_mask.c src/nmt_mask_flat.c src/nmt_master.c src/nmt_covar.c src/nmt_master_flat.c src/nmt_covar_flat.c
+ libnmt_la_CPPFLAGS = $(OPENMP_CFLAGS) -I./src/
+-libnmt_la_LDFLAGS = $(OPENP_CFLAGS) -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++libnmt_la_LDFLAGS = $(OPENP_CFLAGS) -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
+ include_HEADERS = src/namaster.h
+ namaster_SOURCES = src/nmt_main.c
+ namaster_CPPFLAGS = $(OPENMP_CFLAGS) -I./src/
+-namaster_LDFLAGS = $(OPENMP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++namaster_LDFLAGS = $(OPENMP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
+ test_check_nmt_SOURCES = test/nmt_test.c test/nmt_test_utils.c test/nmt_test_fsk.c test/nmt_test_hpex.c test/nmt_test_bins.c test/nmt_test_field.c test/nmt_test_master.c test/nmt_test_covar.c test/nmt_test_bins_flat.c test/nmt_test_field_flat.c test/nmt_test_master_flat.c test/nmt_test_covar_flat.c test/nmt_test_mask.c
+ test_check_nmt_CPPFLAGS = $(OPENMP_CFLAGS) -I./test/ -I./src/
+-test_check_nmt_LDFLAGS = $(OPENP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_omp -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
++test_check_nmt_LDFLAGS = $(OPENP_CFLAGS) -L./ -lnmt -lfftw3 -lfftw3_threads -lpthread -lgsl -lgslcblas -lcfitsio -lsharp -lfftpack -lc_utils -lm
+ all: config.h
+        $(MAKE) $(AM_MAKEFLAGS) all-am
diff --git a/recipes/namaster/build.sh b/recipes/namaster/build.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+set -e
+
+if [[ `uname` == 'Darwin' ]]; then
+    ./configure --prefix=${PREFIX} LIBS="-lomp"
+else
+    ./configure --prefix=${PREFIX} LIBS="-lgomp"
+fi
+make
+make install
+
+${PYTHON} -m pip install . -vv --no-deps
+
+# run tests now since they are not around later
+make check
diff --git a/recipes/namaster/meta.yaml b/recipes/namaster/meta.yaml
@@ -0,0 +1,77 @@
+{% set name = "NaMaster" %}
+{% set version = "0.9" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  fn: {{ name }}-{{ version }}.tar.gz
+  url: https://github.com/LSSTDESC/NaMaster/archive/v{{ version }}.tar.gz
+  sha256: 1e2afa77fd91aa7384957a1f3d3a2ce9d47b9dd013a05c73ab70cee389ceb79e
+  patches:
+    - namaster.h.patch
+    - Makefile.in.patch
+    - Makefile.am.patch
+    - setup.py.patch
+    - test.patch
+
+build:
+  number: 0
+  skip: True  # [win]
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
+  host:
+    - python
+    - pip
+    - gsl
+    - fftw
+    - libsharp
+    - cfitsio
+    - chealpix
+    - numpy
+    - blas 1.1 openblas
+    - openblas
+    - llvm-openmp  # [osx]
+  run:
+    - python
+    - gsl
+    - fftw
+    - libsharp
+    - cfitsio
+    - chealpix
+    - numpy
+    - blas 1.1 openblas
+    - openblas
+    - llvm-openmp  # [osx]
+
+test:
+  source_files:
+    - test/*
+  requires:
+    - healpy
+  imports:
+    - pymaster
+  commands:
+    - namaster -h
+
+about:
+  home: https://github.com/LSSTDESC/NaMaster
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: pseudo-Cl power spectra w/ masking for spin-0 and spin-2 fields
+  description: |
+    NaMaster is a C library, Python module and standalone program to compute
+    full-sky angular cross-power spectra of masked, spin-0 and spin-2 fields
+    with an arbitrary number of known contaminants using a pseudo-Cl
+    (aka MASTER) approach. The code also implements E/B-mode purification
+    and is available in both full-sky and flat-sky modes.
+  doc_url: https://namaster.readthedocs.io
+
+extra:
+  recipe-maintainers:
+    - beckermr
diff --git a/recipes/namaster/namaster.h.patch b/recipes/namaster/namaster.h.patch
@@ -0,0 +1,11 @@
+diff --git a/src/namaster.h b/src/namaster.h
+--- a/src/namaster.h
++++ b/src/namaster.h
+@@ -10,7 +10,6 @@
+ #include <math.h>
+ #include <time.h>
+ #include <complex.h>
+-#include <omp.h>
+ #include <gsl/gsl_vector.h>
+ #include <gsl/gsl_matrix.h>
+ #include <gsl/gsl_linalg.h>
diff --git a/recipes/namaster/run_test.sh b/recipes/namaster/run_test.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+set -e
+
+${PYTHON} -m unittest discover -v
diff --git a/recipes/namaster/setup.py.patch b/recipes/namaster/setup.py.patch
@@ -0,0 +1,19 @@
+diff --git a/setup.py b/setup.py
+--- a/setup.py
++++ b/setup.py
+@@ -14,11 +14,11 @@ except AttributeError:
+
+ use_icc=False #Set to True if you compiled libsharp with icc
+ if use_icc :
+-    libs=['nmt','fftw3','fftw3_omp','sharp','fftpack','c_utils','chealpix','cfitsio','gsl','gslcblas','m','gomp','iomp5']
+-    extra=['-openmp',]
++    libs=['nmt','fftw3','fftw3_threads', 'pthread','sharp','fftpack','c_utils','chealpix','cfitsio','gsl','gslcblas','m']
++    extra=[]
+ else :
+-    libs=['nmt','fftw3','fftw3_omp','sharp','fftpack','c_utils','chealpix','cfitsio','gsl','gslcblas','m','gomp']
+-    extra=['-O4', '-fopenmp',]
++    libs=['nmt','fftw3','fftw3_threads', 'pthread','sharp','fftpack','c_utils','chealpix','cfitsio','gsl','gslcblas','m']
++    extra=['-O4']
+
+
+ _nmtlib = Extension("_nmtlib",
diff --git a/recipes/namaster/test.patch b/recipes/namaster/test.patch
@@ -0,0 +1,13 @@
+diff --git a/test/nmt_test_bins_flat.c b/test/nmt_test_bins_flat.c
+index ca65558..3fa3ce4 100644
+--- a/test/nmt_test_bins_flat.c
++++ b/test/nmt_test_bins_flat.c
+@@ -68,7 +68,7 @@ CTEST(nmt,bins_flat_binning) {
+   nmt_ell_eff_flat(bin,leff);
+   nmt_unbin_cls_flat(bin,&cl_binned,lmax+1,cl,&cl,1);
+
+-  for(ii=0;ii<=bin->n_bands;ii++) {
++  for(ii=0;ii<bin->n_bands;ii++) {
+     ASSERT_DBL_NEAR_TOL(0.5*(bin->ell_0_list[ii]+bin->ell_f_list[ii]),leff[ii],1E-10);
+     ASSERT_DBL_NEAR_TOL(leff[ii],cl_binned[ii],1E-5);
+   }