CLIPper - CLIP peak enrichment recognition

A tool to detect CLIP-seq peaks.

Please visit our wiki page to learn more about usage of clipper: https://github.com/YeoLab/clipper/wiki/CLIPper-Home

Install:

easy_install clipper

or

python setup.py install

Run

clipper -h

<script type="text/javascript"> var _gaq = _gaq || []; _gaq.push(['_setAccount', 'UA-45624377-1']); _gaq.push(['_trackPageview']); (function() { var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true; ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js'; var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s); })(); </script>

If you use clipper please cite Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.