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Designate JH.1 (BQ.1.2.2.1, West Africa, S:K182E, S:P251L, S:486A, S:…
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…S494P, S:E554K, from #2068) with 13 seqs

Resolves #2068
Note: It does not have the 22119-22124 deletion (S:186-187, S:N188Y) shared by most other BQ.1.2.2
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corneliusroemer committed Aug 31, 2023
1 parent 713fcd7 commit ebc32aa
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Showing 3 changed files with 31 additions and 1 deletion.
3 changes: 2 additions & 1 deletion lineage_notes.txt
28 changes: 28 additions & 0 deletions lineages.csv
1 change: 1 addition & 0 deletions pango_designation/alias_key.json

1 comment on commit ebc32aa

@FedeGueli
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JH.1 tree slighty changed :
appeared a subbranch without S:P251L but with S:L249S that further gained S:T478R.
It seems circulating at low levels in England now, maybe within a community.
cc @corneliusroemer @AngieHinrichs should be possible to broaden JH.1 excluding S:P251L from the defining mutations?
Tree:
Schermata 2023-09-26 alle 13 24 25
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_21884_2b9030.json?c=country&label=id:node_8527662

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