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KP.2.3(no 31del)+S:T572I(307 seqs, >10 places ) #2722

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xz-keg opened this issue Aug 8, 2024 · 11 comments
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KP.2.3(no 31del)+S:T572I(307 seqs, >10 places ) #2722

xz-keg opened this issue Aug 8, 2024 · 11 comments

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@xz-keg
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xz-keg commented Aug 8, 2024

From sars-cov-2-variants/lineage-proposals#1735
There is another T572I branch under KP.2.3 besides KP.2.3.6. Unlike the FULL QUAD KP.2.3.6, this one emerges before the S:S31del(which is in most but not all KP.2.3s)

KP.2.3(no 31del)+C23277T(S:T572I)
GISAID query: C22000A, C23277T, G25593T, -del21653, -28714
No. of seqs: 115(Australia 1 Canada 11 UK 2 Singapore 2 Ireland 1 Israel 9 New Zealand 7 Spain 1 USA 80(2 from France))

First: EPI_ISL_19233571, 2024-4-16, USA
Latest: EPI_ISL_19313288, 2024-7-29, Canada

I checked the KP.2.3+S:T572I branch, it seems that the largest ones (C7420T branch and C19089T, C23533T branch ) do not have S:S31del. So we shall assume T572I comes first after direct no-31-del KP.2.3.
Designation can safely starts at S:T572I.

usher
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@xz-keg
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xz-keg commented Aug 13, 2024

132, Italy, UAE

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(115 seqs, 10 countries ) KP.2.3(no 31del)+S:T572I(132 seqs, 12 countries ) Aug 13, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(132 seqs, 12 countries ) KP.2.3(no 31del)+S:T572I(151 seqs, 12 countries ) Aug 19, 2024
@xz-keg
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xz-keg commented Aug 24, 2024

194, Sweden

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(151 seqs, 12 countries ) KP.2.3(no 31del)+S:T572I(194 seqs, 13 countries ) Aug 24, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(194 seqs, 13 countries ) KP.2.3(no 31del)+S:T572I(197 seqs, 13 countries ) Aug 29, 2024
@xz-keg
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xz-keg commented Sep 3, 2024

209, Mexico

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(197 seqs, 13 countries ) KP.2.3(no 31del)+S:T572I(209 seqs, 14 countries ) Sep 3, 2024
@xz-keg
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xz-keg commented Sep 7, 2024

220, China

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(209 seqs, 14 countries ) KP.2.3(no 31del)+S:T572I(220 seqs, 15 countries ) Sep 7, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(220 seqs, 15 countries ) KP.2.3(no 31del)+S:T572I(230 seqs, 15 countries ) Sep 12, 2024
@xz-keg
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xz-keg commented Sep 17, 2024

242, Slovenia, Luxembourg

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(230 seqs, 15 countries ) KP.2.3(no 31del)+S:T572I(242 seqs, 17 countries ) Sep 17, 2024
@FedeGueli
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246 Australia

@DailyCovidCases
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Now 262 seqs
Tracked in issue2722
usher
Screenshot (231)
@corneliusroemer Is this branch worth a designation?

@xz-keg
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xz-keg commented Sep 27, 2024

261 ,greece

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(242 seqs, 17 countries ) KP.2.3(no 31del)+S:T572I(261 seqs, >10 places ) Sep 27, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(261 seqs, >10 places ) KP.2.3(no 31del)+S:T572I(271 seqs, >10 places ) Oct 6, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(271 seqs, >10 places ) KP.2.3(no 31del)+S:T572I(282 seqs, >10 places ) Oct 11, 2024
@Over-There-Is
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284

@FedeGueli
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15/289 from september likely dying off

@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(282 seqs, >10 places ) KP.2.3(no 31del)+S:T572I(289 seqs, >10 places ) Oct 14, 2024
@xz-keg xz-keg changed the title KP.2.3(no 31del)+S:T572I(289 seqs, >10 places ) KP.2.3(no 31del)+S:T572I(307 seqs, >10 places ) Oct 19, 2024
@FedeGueli
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