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1. pancanmafmerge pancanmafmerge Public

   A repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom …

   Python 6 4

2. vcf2maf vcf2maf Public

   Forked from mskcc/vcf2maf

   Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

   Perl 2

3. KRCGTK KRCGTK Public

   KRC Genomics Toolkit

   Java 1 3

4. malign malign Public

   multiz alignment parser

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5. fullstack-nanodegree-vm fullstack-nanodegree-vm Public

   Forked from udacity/fullstack-nanodegree-vm

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6. gatk_pipeline gatk_pipeline Public

   Forked from ShujiaHuang/gatk_pipeline

   GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK

   C++