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Cannot locate GATK.jar file #17

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Jokendo-collab opened this issue May 3, 2020 · 1 comment
Closed

Cannot locate GATK.jar file #17

Jokendo-collab opened this issue May 3, 2020 · 1 comment

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@Jokendo-collab
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I have over 200 RNAsew raw files and I wanted to run this program on our HPC, which uses slurm as a job scheduler. I keep on getting this error even after downloading the correct version (3.7) of the gatk jar file. Can you help me on how to configure this pipeline to run on HPC?
@pditommaso
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Same as #18 (comment)

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@pditommaso @Jokendo-collab