Compile didn't work

[mbelouso]

Hey guys,

I compiled your software (with the help of miniconda) and it compiled all right but when I ran make tests-verbose I got the following error:

` test 4
Start 4: progs

4: Test command: /bin/bash "/usr/local/eman2/tests/run_prog_tests.sh"
4: Test timeout computed to be: 9.99988e+06
4: basename: missing operand
4: Try 'basename --help' for more information.
4/5 Test #4: progs ............................***Failed 0.01 sec
test 5
Start 5: py-compile

5: Test command: /home/mbelouso/miniconda2/bin/python "-m" "compileall" "-q" "/usr/local/eman2"
5: Test timeout computed to be: 9.99988e+06
5/5 Test #5: py-compile ....................... Passed 0.04 sec

80% tests passed, 1 tests failed out of 5

Total Test time (real) = 12.47 sec

The following tests FAILED:
4 - progs (Failed)
Errors while running CTest
CMakeFiles/test-verbose.dir/build.make:57: recipe for target 'CMakeFiles/test-verbose' failed
make[3]: *** [CMakeFiles/test-verbose] Error 8
CMakeFiles/Makefile2:163: recipe for target 'CMakeFiles/test-verbose.dir/all' failed
make[2]: *** [CMakeFiles/test-verbose.dir/all] Error 2
CMakeFiles/Makefile2:170: recipe for target 'CMakeFiles/test-verbose.dir/rule' failed
make[1]: *** [CMakeFiles/test-verbose.dir/rule] Error 2
Makefile:214: recipe for target 'test-verbose' failed
make: *** [test-verbose] Error 2 `

And when I try and run something basic like e2display.py

File "/home/mbelouso/miniconda2/bin/e2display.py", line 2 from __future__ import print_function SyntaxError: future feature print_function is not defined

cmake didn't give any glaring errors, although when it compiled there we lots and lots of warnings about unused variables...

Thanks for your time and efforts with this project!

[sludtke42]

Hi. 2 quick possibilities: 1) are you sure the miniconda python is before any other python in your PATH 2) we are working towards Python3 now, and are making a bunch of Python2 compatible changes right now. A few days ago some changes were committed to GitHub which require the "future" package, ie: conda install future If you're still having issues, please post again! -------------------------------------------------------------------------------------- Steven Ludtke, Ph.D. <sludtke@bcm.edu <mailto:sludtke@bcm.edu>> Baylor College of Medicine Charles C. Bell Jr., Professor of Structural Biology Dept. of Biochemistry and Molecular Biology (www.bcm.edu/biochem <http://www.bcm.edu/biochem>) Academic Director, CryoEM Core (cryoem.bcm.edu <http://cryoem.bcm.edu/>) Co-Director CIBR Center (www.bcm.edu/research/cibr <http://www.bcm.edu/research/cibr>) Co-Director National Center For Macromolecular Imaging (ncmi.bcm.edu <http://ncmi.bcm.edu/>)

…

On Jul 15, 2018, at 7:56 PM, mbelouso ***@***.***> wrote: Hey guys, I compiled your software (with the help of miniconda) and it compiled all right but when I ran make tests-verbose I got the following error: ` test 4 Start 4: progs 4: Test command: /bin/bash "/usr/local/eman2/tests/run_prog_tests.sh" 4: Test timeout computed to be: 9.99988e+06 4: basename: missing operand 4: Try 'basename --help' for more information. 4/5 Test #4 <#4>: progs ............................***Failed 0.01 sec test 5 Start 5: py-compile 5: Test command: /home/mbelouso/miniconda2/bin/python "-m" "compileall" "-q" "/usr/local/eman2" 5: Test timeout computed to be: 9.99988e+06 5/5 Test #5 <#5>: py-compile ....................... Passed 0.04 sec 80% tests passed, 1 tests failed out of 5 Total Test time (real) = 12.47 sec The following tests FAILED: 4 - progs (Failed) Errors while running CTest CMakeFiles/test-verbose.dir/build.make:57: recipe for target 'CMakeFiles/test-verbose' failed make[3]: *** [CMakeFiles/test-verbose] Error 8 CMakeFiles/Makefile2:163: recipe for target 'CMakeFiles/test-verbose.dir/all' failed make[2]: *** [CMakeFiles/test-verbose.dir/all] Error 2 CMakeFiles/Makefile2:170: recipe for target 'CMakeFiles/test-verbose.dir/rule' failed make[1]: *** [CMakeFiles/test-verbose.dir/rule] Error 2 Makefile:214: recipe for target 'test-verbose' failed make: *** [test-verbose] Error 2 ` And when I try and run something basic like e2display.py File "/home/mbelouso/miniconda2/bin/e2display.py", line 2 from __future__ import print_function SyntaxError: future feature print_function is not defined cmake didn't give any glaring errors, although when it compiled there we lots and lots of warnings about unused variables... Thanks for your time and efforts with this project! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#220>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AJ6i6vIfzmOMD6TzhkDdGTxP3bpfH0RNks5uG-SxgaJpZM4VQdPM>.

[mbelouso]

Thanks,

Installing future fixed things! Again, thanks for the titanic effort it is to provide this software to the cryoEM community.

cheers,

matt B