ERROR in temp file

[robertosirica]

Hello, I' m currently performing a variant calling on human fastq with LoFreq, I'm experimentig the issue in the title, and the following error appears:
ERROR(lofreq_call.c|main_call:1408): Couldn't open /tmp/lofreq2-call-dyn-bonf.m6pt5o
ERROR(lofreq_call.c|main_call:1408): Couldn't open /tmp/lofreq2-call-dyn-bonf.Q3JZXo
ERROR(lofreq_call.c|main_call:1408): Couldn't open /tmp/lofreq2-call-dyn-bonf.8NdFDn
ERROR(lofreq_call.c|main_call:1408): Couldn't open /tmp/lofreq2-call-dyn-bonf.JjJTbv

This error shows up only for some samples of the same run, for other samples the software works perfectly, could you help me in some way?
Best Regards

[andreas-wilm]

Hi Roberto,

this is indeed a bit weird. Which version are you using? This happens before LoFreq does anything at all. If you are running this on a cluster, could it be that this happens on one specific node and that something's wrong there with /tmp? You could also try to write to /tmp before you're running LoFreq (e.g. touch a file there), just to see if everything's okay with /tmp.

Andreas