Error in eval(expr, envir, enclos) : objeto 'Stat' não encontrado #18
Comments
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I think we already faced this bug before. There's this issue on the ggnetwork repo that was fixed in this PR. Maybe the CRAN version is not synced with the github repo. |
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No, I haven't faced it in a while actually, Helder had the issue on his PC. I'll check his package versions later to see if it matches mine. |
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Plotting interaction network ...
Erro: GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Além disso: Warning message:
In fortify.network(intergraph::asNetwork(model), ...) :
duplicated edges detected
…On Mon, May 22, 2017 at 12:02 PM, pedrostrusso ***@***.***> wrote:
No, I haven't faced it in a while actually, Helder had the issue on his
PC. I'll check his package versions later to see if it matches mine.
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Raul in Chile also had the same problem:
Error in eval(`_inherit`, env, NULL) : object 'Stat' not found
Calls: cemitool ... fetch_ggproto -> fetch_ggproto -> super -> eval -> eval
In addition: Warning messages:
1: executing %dopar% sequentially: no parallel backend registered
2: In is.na(x[[i]]) :
is.na() applied to non-(list or vector) of type 'environment'
3: In fortify.network(intergraph::asNetwork(model), ...) :
duplicated edges detected
Execution halted
…On Mon, May 22, 2017 at 12:27 PM, Helder Nakaya ***@***.***> wrote:
Plotting interaction network ...
Erro: GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Além disso: Warning message:
In fortify.network(intergraph::asNetwork(model), ...) :
duplicated edges detected
On Mon, May 22, 2017 at 12:02 PM, pedrostrusso ***@***.***>
wrote:
> No, I haven't faced it in a while actually, Helder had the issue on his
> PC. I'll check his package versions later to see if it matches mine.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <#18 (comment)>,
> or mute the thread
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>
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The error is related to "intertactions" parameter and plot function.
…On Mon, May 22, 2017 at 6:32 PM, Helder Nakaya ***@***.***> wrote:
Raul in Chile also had the same problem:
Error in eval(`_inherit`, env, NULL) : object 'Stat' not found
Calls: cemitool ... fetch_ggproto -> fetch_ggproto -> super -> eval -> eval
In addition: Warning messages:
1: executing %dopar% sequentially: no parallel backend registered
2: In is.na(x[[i]]) :
is.na() applied to non-(list or vector) of type 'environment'
3: In fortify.network(intergraph::asNetwork(model), ...) :
duplicated edges detected
Execution halted
On Mon, May 22, 2017 at 12:27 PM, Helder Nakaya ***@***.***> wrote:
> Plotting interaction network ...
> Erro: GeomLabelRepel was built with an incompatible version of ggproto.
> Please reinstall the package that provides this extension.
> Além disso: Warning message:
> In fortify.network(intergraph::asNetwork(model), ...) :
> duplicated edges detected
>
> On Mon, May 22, 2017 at 12:02 PM, pedrostrusso ***@***.***>
> wrote:
>
>> No, I haven't faced it in a while actually, Helder had the issue on his
>> PC. I'll check his package versions later to see if it matches mine.
>>
>> —
>> You are receiving this because you are subscribed to this thread.
>> Reply to this email directly, view it on GitHub
>> <#18 (comment)>,
>> or mute the thread
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>> .
>>
>
>
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As @matheuscburger and @lecardozo pointed out, the issue is accounted for and fixed in the ggnetwork GitHub page. However, I downloaded the tar.gz from CRAN and saw that the changes they made to the package weren't updated. So is there a way for us to make a user's pc download the package from the GitHub repo instead of a CRAN mirror when CEMiTool is being installed? |
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I think we could set a specific version of ggnetwork in the DESCRIPTION
file, so that we obligate the user to install the most recent version of
ggnetwork. Also we can show in the vignette how to install the ggnetwork
using devtools.
2017-05-24 12:56 GMT-03:00 pedrostrusso <notifications@github.com>:
… As @matheuscburger <https://github.com/matheuscburger> and @lecardozo
<https://github.com/lecardozo> pointed out, the issue is accounted for
and fixed in the ggnetwork GitHub page. However, I downloaded the tar.gz
from CRAN and saw that the changes they made to the package weren't
updated. So is there a way for us to make a user's pc download the package
from the GitHub repo instead of a CRAN mirror when CEMiTool is being
installed?
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<#18 (comment)>,
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--
Matheus Carvalho Bürger
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It seems like we fixed the problem. @lecardozo forked the ggnetwork repo and edited the functions to import Stat from ggplot2, and added these imports to our NAMESPACE file. |
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This error appeared during the Bioconductor build attempts. More details at: Maybe Bioconductor isn't getting the package from the ggnetwork fork @lecardozo created? Do you guys think that if we import Stat ourselves in the CEMiTool package (instead of doing it in the ggnetwork package) it could work? |
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I removed the ggnetwork package dependency. There should be no more issue now. |
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Dear all ~ FWIW, |
Apparently it has to do with the sna package. Looking into it.
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