Add get_consent

[boulund]

Add support for Consent endpoint

[boulund]

I just tested this and the failure modes, and everything seems to work well.

Should be ready to merge to develop @chichackles. I will use when I build the biobank export step later so we only export samples with a valid consent (i.e. OPTIN).

It's straightforward to use:

import clarity_ext_scripts.covid.partner_api_client.PartnerAPIV7Client as client
consent = client.get_consent("000000")  # some valid patient number

This returns the Consent resource from the json response. The actual consent can be accessed by:

>>> consent["policyRule"]["coding"]["code"]
u'OPTIN'

[chichackles]

Merged От: Fredrik Boulund <notifications@github.com> Обратный адрес: ctmrbio/claritylims <reply@reply.github.com> Дата: пятница, 16 октября 2020 г. в 13:31 Кому: ctmrbio/claritylims <claritylims@noreply.github.com> Копия: Dmitry Chekmenev <dmitry.chekmenev@scilifelab.se>, Review requested <review_requested@noreply.github.com> Тема: Re: [ctmrbio/claritylims] Add get_consent (#260) @boulund<https://github.com/boulund> requested your review on: #260<#260> Add get_consent. — You are receiving this because your review was requested. Reply to this email directly, view it on GitHub<#260 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AJFXYOY3UXZDUHTUUBLMGG3SLAVKDANCNFSM4STESGLQ>.