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Computational biology resource repositories

Resources contributed by various computational biology groups at Columbia University Medical Center

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  1. xqtl-protocol xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 33 42

  2. bioworkflows bioworkflows Public

    In-house computational biology workflows at Columbia Neurology

    Jupyter Notebook 26 43

  3. pecotmr pecotmr Public

    Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    C++ 10 12

  4. handson-tutorials handson-tutorials Public

    Computer lab tutorials on statistical genetics and omics data science, contributed by various members from the community interested in developing training material for the next generation scientists

    Jupyter Notebook 4 10

  5. xqtl-data xqtl-data Public

    Molecular QTL data resource developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 2 4

  6. dsc dsc Public

    Forked from stephenslab/dsc

    Repo for Dynamic Statistical Comparisons project

    Python 1

Repositories

Showing 8 of 8 repositories
  • xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    cumc/xqtl-protocol’s past year of commit activity
    Jupyter Notebook 33 MIT 42 68 (5 issues need help) 0 Updated Jul 20, 2024
  • pecotmr Public

    Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    cumc/pecotmr’s past year of commit activity
    C++ 10 12 3 0 Updated Jul 20, 2024
  • xqtl-data Public

    Molecular QTL data resource developed by ADSP Functional Genomics Consortium

    cumc/xqtl-data’s past year of commit activity
    Jupyter Notebook 2 4 0 0 Updated Jul 17, 2024
  • handson-tutorials Public

    Computer lab tutorials on statistical genetics and omics data science, contributed by various members from the community interested in developing training material for the next generation scientists

    cumc/handson-tutorials’s past year of commit activity
    Jupyter Notebook 4 10 0 0 Updated Jul 7, 2024
  • bioworkflows Public

    In-house computational biology workflows at Columbia Neurology

    cumc/bioworkflows’s past year of commit activity
    Jupyter Notebook 26 43 6 2 Updated Apr 11, 2024
  • simxQTL Public

    In house simulation R package to support investigations of various QTL association methods

    cumc/simxQTL’s past year of commit activity
    R 0 MIT 2 1 0 Updated Feb 26, 2024
  • cumc/FunGenKit’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 12, 2023
  • dsc Public Forked from stephenslab/dsc

    Repo for Dynamic Statistical Comparisons project

    cumc/dsc’s past year of commit activity
    Python 1 MIT 12 6 0 Updated Feb 24, 2022

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