Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Beginner's guide #22

Merged
merged 6 commits into from
Jul 12, 2021
Merged

Beginner's guide #22

merged 6 commits into from
Jul 12, 2021

Conversation

koalive
Copy link
Contributor

@koalive koalive commented May 27, 2021

Hi!
This PR implements a basic Beginner's guide for researchers new to morphological profiling. I had to give such introductions myself a few times already so I hope this can be a useful starting point. This aims to be a short read and not a detailed review or guideline.
I suggest leaving the PR open for a while to collect comments both on the content (anything missing or plain wrong?) and the form (we discussed having it on the website for convenience but that might clutter a bit the main page).
Cheers!

@fheigwer fheigwer self-assigned this Jul 6, 2021
@gwaybio gwaybio requested a review from fheigwer July 6, 2021 13:58
@fheigwer
Copy link
Member

fheigwer commented Jul 8, 2021

Please find below where I found issues

  • the basic"s" steps of morphological profiling are (maybe a matter of taste)
  • Learn what the basic"s" steps are (maybe a matter of taste)
  • biological questions you"r" are adressing
  • n"o"one in your local
  • this is awesome :-)
  • maybe you can mention the https://github.com/cytodata/single-cell-classifier as a pipeline example for downstream processing that is rather well-structured and "easy" to grasp

Copy link
Member

@fheigwer fheigwer left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Please find below where I found issues

the basic"s" steps of morphological profiling are (maybe a matter of taste)
Learn what the basic"s" steps are (maybe a matter of taste)
biological questions you"r" are adressing
n"o"one in your local
this is awesome :-)
maybe you can mention the https://github.com/cytodata/single-cell-classifier as a pipeline example for downstream processing that is rather well-structured and "easy" to grasp

@koalive
Copy link
Contributor Author

koalive commented Jul 12, 2021

Thanks Florian, good suggestions! I just did that and added a link to BioProfiling.jl as a Julia alternative to cytominer, as suggested by Greg. Let's merge?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants