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Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
blast docker image and cyverse integration
Dockerized Agave app for Polymarker, a SNP assay development pipeline
A collection of scripts for the cyverse UK clusters
Dockerized Agave app for GWASSER, an R script for simple gwassing.
docker image and Agave app for Trimmomatic software
Docker build to submit to the EMBL-EBI ENA
base templates for Dockerfile and wrappers
Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.
Wiki of CyVerseUK project. Tutorials and overview of technologies.
RAxML agave app and docker image
Beast 2 agave & docker package