Pinned repositories

  1. Documentation

    Wiki of CyVerseUK project. Tutorials and overview of technologies.

    1

  2. templates

    base templates for Dockerfile and wrappers

  3. GWASSER

    Dockerized Agave app for GWASSER, an R script for simple gwassing.

    R 1

  4. mikado

    Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies

    Shell

  5. portcullis

    portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis

    Shell

  6. tuxedo

    Tuxedo suite for up to 4 conditions

    Python

  • Python MIT Updated Jul 27, 2018
  • Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies

    Shell MIT Updated May 11, 2018
  • Python 1 Updated Apr 10, 2018
  • blast docker image and cyverse integration

    Shell MIT Updated Feb 13, 2018
  • Dockerized Agave app for Polymarker, a SNP assay development pipeline

    Shell MIT Updated Feb 8, 2018
  • Updated Jan 29, 2018
  • Shell MIT Updated Sep 21, 2017
  • A collection of scripts for the cyverse UK clusters

    Python 1 Updated Jul 31, 2017
  • Dockerized Agave app for GWASSER, an R script for simple gwassing.

    R 1 GPL-2.0 Updated Jul 14, 2017
  • Shell MIT Updated May 24, 2017
  • Shell MIT Updated May 24, 2017
  • Shell 1 MIT Updated May 22, 2017
  • Shell MIT Updated May 22, 2017
  • Shell MIT Updated May 16, 2017
  • Shell MIT Updated May 16, 2017
  • Shell MIT Updated May 16, 2017
  • Shell MIT Updated May 16, 2017
  • Shell MIT Updated May 15, 2017
  • docker image and Agave app for Trimmomatic software

    MIT Updated May 11, 2017
  • Shell MIT Updated May 8, 2017
  • Docker build to submit to the EMBL-EBI ENA

    Python Updated May 5, 2017
  • MIT Updated Apr 21, 2017
  • Shell MIT Updated Apr 21, 2017
  • base templates for Dockerfile and wrappers

    MIT Updated Apr 20, 2017
  • Shell MIT Updated Apr 20, 2017
  • Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.

    Ruby Updated Apr 12, 2017
  • Wiki of CyVerseUK project. Tutorials and overview of technologies.

    1 Updated Apr 3, 2017
  • Shell 1 Updated Mar 29, 2017
  • RAxML agave app and docker image

    Shell MIT Updated Mar 27, 2017
  • Beast 2 agave & docker package

    Shell MIT Updated Mar 27, 2017