fix python packages logic to account for the fact that ls-files doesn't list directories #25045
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this was an oversight on my part because I thought
git ls-files .
would include directories. I thought I had verified the resulting packages but I guess was confused because we still traverse explicit packages that are listed. This fixes like in https://app.graphite.dev/github/pr/dagster-io/internal/12014/alerts-fix-build-by-adding-logging-statement-back where we weren't running dagit tests after backend changedTest Plan