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Run pipelines on datasets #10

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jacob-rosenthal opened this issue Oct 8, 2020 · 2 comments
Closed

Run pipelines on datasets #10

jacob-rosenthal opened this issue Oct 8, 2020 · 2 comments
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enhancement New feature or request

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@jacob-rosenthal
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Implement a method to run a preprocessing pipeline on a dataset.
Should basically be a convenience function for running pipeline on each individual image.

Pseudocode:

mydataset = pathml.datasets.PESO.download()
mypipeline = pathml.preprocessing.default_pipeline()

mypipeline.run(mydataset)
### should be equivalent to:
for wsi in mydataset:
    mypipeline.run(wsi)
@jacob-rosenthal
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This should ideally be parallelizable

@jacob-rosenthal jacob-rosenthal added the enhancement New feature or request label Oct 21, 2020
@jacob-rosenthal
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Should probably use something like this: https://joblib.readthedocs.io/en/latest/parallel.html#

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