install knitr when running r check with only hard dependencies #20
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # the purpose of this workflow is to run R CMD CHECK without installing suggested packages | |
| # CRAN will check this | |
| on: | |
| push: | |
| branches: [main, master, test] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check-hard-dependencies-only | |
| jobs: | |
| R-CMD-check-hard-deps: | |
| # if: github.repository == 'darwin-eu-dev/CDMConnector' || github.repository == 'darwin-eu/CDMConnector' | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| CI_TEST_DB: duckdb | |
| TESTTHAT_CPUS : 1 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"hard"' # install only imports, depends, and linking to (hard dependencies) | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install R packages | |
| run: | | |
| install.packages("knitr") | |
| shell: Rscript {0} | |
| - name: List contents of home directory | |
| run: | | |
| print("Home directory content before R check") | |
| print(list.files(path.expand("~"))) | |
| shell: Rscript {0} | |
| - name: Add options to .Rprofile | |
| run: | | |
| echo "options(rmarkdown.html_vignette.check_title = FALSE)" >> ~/.Rprofile | |
| shell: bash | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| args: 'c("--no-manual", "--as-cran", "--no-build-vignettes", "--ignore-vignettes")' | |
| error-on: '"error"' | |
| - name: List contents of home directory after R check | |
| run: | | |
| print("Home directory content after R check. Should be the same as before R check.") | |
| print(list.files(path.expand("~"))) | |
| shell: Rscript {0} | |