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Support NeuroBagel annotation tool #407

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mih opened this issue Oct 28, 2022 · 1 comment
Open

Support NeuroBagel annotation tool #407

mih opened this issue Oct 28, 2022 · 1 comment

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@mih
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mih commented Oct 28, 2022

https://www.neurobagel.org

This is essentially a client-side javascript annotation tool/workflow that produces a downloadable JSON object. In the future it will also support loading stored metadata.

The plan is to have a datalad extension that contains the JS blob and announces this metadata source to gooey via the envisioned entry point.

Ping @surchs @jsheunis

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surchs commented Nov 1, 2022

Thanks @mih, this sounds great. Right now we're working to get the annotator to output and load a JSON data dictionary - and in the process we're changing how the list of categories you can annotate are defined. Two things we could talk about in this context are:

  1. The format of the data dictionary we're planning on creating and being able to load: define format for data dictionary output neurobagel/annotation_tool#220 The idea is that this format we use together with other metadata projects like dandi and repronim, and hopefully others
  2. A format for a user createable config file that specifies the list of categories you'll see when you start the tool: define format for annotator config file neurobagel/annotation_tool#221

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