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48 Open 43 Closed
48 Open 43 Closed
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Issues list

Generated many same sequences but with differnet scores
#116 opened Oct 30, 2024 by hqdream
What's the meaning of "/" in the output .fasta file in ProteinMPNN?
#115 opened Oct 21, 2024 by LinnjiaWen
3
parse cif to train structured data error
#114 opened Sep 18, 2024 by FlorientHuang
2
What dose 'S' key mean in score_only result
#113 opened Sep 5, 2024 by yipukangda
No chain_set_test.jsonl file in the root directory
#111 opened Jul 19, 2024 by Eager-to-earn-money-standing-up
1
How to confirm the global polar amino acid bias value? What is the meaning of 1.39?
#110 opened Jul 15, 2024 by luojc712
1
--omit_AA "CM" parameter?
#109 opened Jul 15, 2024 by Jahyunhong
jsonl file to pdb
#108 opened Jul 13, 2024 by ahorvath
No use of GPU?
#107 opened Jun 1, 2024 by khayatlab
1
Global_score
#106 opened May 7, 2024 by zjlclimb
what pdbx package does parse_cif_noX.py expect?
#105 opened May 2, 2024 by cseed
2
Sampling temperature for flexible chains
#104 opened Apr 24, 2024 by Davood-Norouzi
.Fa Output reorganization question
#103 opened Apr 24, 2024 by noah-c-noah-do
Questions about model weights
#100 opened Apr 17, 2024 by mh8859
RuntimeError: Class values must be smaller than num_classes. | protein_mpnn_utils.py & mask_size issue?
#99 opened Apr 4, 2024 by emilyrkang
What is the difference between --conditional_probs_only_backbone and --unconditional_probs_only
#97 opened Mar 25, 2024 by tsjain
1
Training time
#96 opened Mar 14, 2024 by sahamitul
1
Creates hydrophobic surface patches wit many Ala side chains
#95 opened Feb 29, 2024 by gha2012
2
Model is adding an amino acid to the original sequence
#92 opened Feb 26, 2024 by tony-res
5
Need of assistance and advising
#91 opened Feb 21, 2024 by Hanoriega
How do I use a PSSM with proteinMPNN?
#90 opened Feb 15, 2024 by proteins247
Amino acid sequence has too many "K/E"
#89 opened Feb 13, 2024 by kjogr12
2
Design complexes with unknown chains (proposed fix included)
#86 opened Feb 7, 2024 by SimonCrouzet
whether to redesign low confidence aas
#85 opened Jan 20, 2024 by 18217265596
Retrieve per-position scores or score a chain in the context of another
#84 opened Jan 19, 2024 by amin-sagar
ProTip! Exclude everything labeled bug with -label:bug.