This project includes the source code for a django/python based biomedical research laboratory website. This was largely configured for personal use, but is licensed under a CC0 free license, so feel free to copy and modify with no restrictions.

Installation and Setup

1. Clone or download this code and extract it somewhere on your system.
2. Inside the lab_website directory, open localsettings_empty.py with a text editor and fill in 'django.db.backends.sqlite3' under DATABASES... ENGINE and enter a location for your SQLite database to be stored under NAME. To use other database types see the Django Documentation on Databases.
3. Optional: Fill in the the ADMINS, TIME_ZONE and LANGUAGE_CODE as needed.

4. Save this file as localsettings.py in the same directory. 4. Run the following command within the Lab Website directory to populate the database. Enter the superuser information when prompted:

python manage.py syncdb
python manage.py schemamigration communication --initial
python manage.py schemamigration papers --initial
python manage.py schemamigration personnel --initial
python manage.py schemamigration projects --initial
python manage.py migrate --fake

Testing

Run the test suite with:

python manage.py test

In localsettings.py, set Debug=FALSE when you have verified everything is working.

Dependencies and Other Apps

The two main software dependencies for this project are Python and Django. You will require a database backend and a webserver for proper function. For detailed installation instructions for Django see Django Installation Instructions

The current version uses Python 2.7 and Django 1.4.

To install python dependencies, entering on a command line:

pip install -r requirements.txt

Another python package dependency is the python-oauth2 library. This can be downloaded and installed from https://github.com/brosner/python-oauth2.

This project also includes links to three other apps which would have to be installed and configured separately:

• Blog: any blogging software served at http://yourserver/blog
• Protocol Wiki: a wikimedia based protocol site served at http://yourserver/wiki
• MouseDB: a database for animal colony management which can optionally be served at http://yoursever/mousedb. Based on software available at http://github.com/davebridges/mousedb
• ExperimentDB: a data and laboratory inventory management tool which can optionally be served at http://yourserver/experimentdb. Uses software available at https://github.com/davebridges/ExperimentDB