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Python module for using MIROSLAV files as file-like objects with seamless preprocessing.

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mirofile - Your buddy for dealing with raw MIROSLAV data

What is it?

MIROSLAV (Multicage InfraRed Open Source Locomotor Activity eValuator) is a platform for non-invasive monitoring of circadian locomotor activity in laboratory rodents. All of its hardware and software components are described in the paper: #url

This mirofile library, acting as a file-like object, loads raw MIROSLAV files containing experimental data and parses them into a sequence of lists, each containing appropriately-typed timestamps and sensor readings, which can then be turned into a pandas data frame by the user.

A script which exemplifies the use of this library can also be found in the MIROSLAV paper's data repository: #url.

How to install?

mirofile is available on PyPi can be installed with pip:

pip install mirofile
Dependencies
  • tqdm - can be also be installed with pip

License

The code is distributed under GPLv3.

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Python module for using MIROSLAV files as file-like objects with seamless preprocessing.

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