NeoHIC is a web application for the progressive graph visualization of Hi-C data based on the use of the Neo4j graph database.
It is composed by two main entities: the three files for the analysis and visualization of Hi-C data (neohic.html, neohic-analysis.html and the library neovis-hic.js, representing the NeoHIC web application) and a Neo4j version 3.5.x instance. The NeoHIC web app can be exploited locally or installed on a http server. Also Neo4j can be installed locally for personal use. Otherwise it is necessary to specify the parameters to connect a remote serve in the two HTML files
server_url: "bolt://IP_HERE:7687"
server_user: "neo4j"
server_password: "PWD_HERE"
The neovis-hic.js is a modified version of the neovis v 1.14 library. It will be updated after its final release.
The nuchart_dot2csv.js parses the output produced by nuchart and it creates three CSV to be uploaded using the neo4j console.
More details in the paper that will be presented at CIBB 2019