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Hi I'm trying to get oligomeric structure of a protein. I'm able to get the monomer through AlphaFold Colab but when i try to use the oligomeric feature it is crashing.
Error # Your session crashed after using all available RAM. If you are interested in access to high-RAM runtimes, you may want to check out Colab Pro.
NameError Traceback (most recent call last)
in ()
5 use_model = {}
6 if "model_params" not in dir(): model_params = {}
----> 7 for model_name in ["model_1","model_2","model_3","model_4","model_5"][:num_models]:
8 use_model[model_name] = True
9 if model_name not in model_params:
NameError: name 'num_models' is not defined
When i try to use local runtime, getting another error...
Unrecognized runtime "python3"; defaulting to "python2"
Please help, if anyone have any solution for this.
Thanks
Pankaj
The text was updated successfully, but these errors were encountered:
Hi, it seems like notebook that you're using is actually a separate unofficial project rather than our AlphaFold Colab. Please see their repository here: https://github.com/sokrypton/ColabFold -- hopefully they're able to help with your issue.
We're excited to see how people are using AlphaFold but please note that AlphaFold was not trained or validated on oligomeric structures so we do not support that use case in our Colab at the moment.
Hi I'm trying to get oligomeric structure of a protein. I'm able to get the monomer through AlphaFold Colab but when i try to use the oligomeric feature it is crashing.
Error # Your session crashed after using all available RAM. If you are interested in access to high-RAM runtimes, you may want to check out Colab Pro.
NameError Traceback (most recent call last)
in ()
5 use_model = {}
6 if "model_params" not in dir(): model_params = {}
----> 7 for model_name in ["model_1","model_2","model_3","model_4","model_5"][:num_models]:
8 use_model[model_name] = True
9 if model_name not in model_params:
NameError: name 'num_models' is not defined
When i try to use local runtime, getting another error...
Unrecognized runtime "python3"; defaulting to "python2"
Please help, if anyone have any solution for this.
Thanks
Pankaj
The text was updated successfully, but these errors were encountered: