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support hsp tiling without sequences #13

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tolot27 opened this issue Apr 20, 2018 · 1 comment
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support hsp tiling without sequences #13

tolot27 opened this issue Apr 20, 2018 · 1 comment
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@tolot27
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tolot27 commented Apr 20, 2018

For a quick overview of the blast hits it would be helpful to get the tilled hsp statistics without the alignment.

Currently, qseq and sseq must be written to the blast output and mview needs quite a bit of time computing the alignment, especially for larger sequences.

@desmid desmid self-assigned this Apr 23, 2018
@desmid desmid changed the title support hsp tilling without sequences support hsp tiling without sequences Apr 24, 2018
@desmid
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desmid commented Apr 25, 2018

  1. Added '-sequences on|off ' option, which disables tiling and output of sequences as well as processing of %identity, %coverage. Moderate speed improvement.

  2. Profiled code: largest time spent in i/o routines; another smaller speed improvement made.

@desmid desmid closed this as completed Apr 25, 2018
desmid added a commit that referenced this issue Apr 25, 2018
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