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  1. Single_Cell_Iterative_Pooling Single_Cell_Iterative_Pooling Public

    Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enrich…

    Python 1

  2. biotagging biotagging Public

    Python scripts necessary to reproduce ATAC-seq and RNA-seq analysis in Biotagging manuscript

    Perl 1

  3. Zebrafish_mappability Zebrafish_mappability Public

    Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

    Python

  4. Histone_ChIPseq_questioning Histone_ChIPseq_questioning Public

    Python

  5. Useful_small_scripts_for_DESeq2 Useful_small_scripts_for_DESeq2 Public

    Some useful scripts useful for parsing or writing DESeq2 Scripts

    Python