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Attempts to update #150 after my other merges #157

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Attempts to update #150 after my other merges #157

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Commits on Nov 24, 2020

  1. Experiments in exploring the taxonomy of contaminants, mark 2. (#149) ( 

    #155)

* update to output more detailed contam info

* add system exit

* fix template notebook names

* make numpy not a req for import

* make sourmash not a req for import

* fix nbconvert command line

* udpate README
    @ctb
    ctb committed Nov 24, 2020
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  2. Fix tests (#156) 

    * switch to using sig.name in sourmash

* fix contam json

* yay finished fixing tests
    @ctb
    ctb committed Nov 24, 2020
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  3. Merge branch 'latest' of github.com:dib-lab/charcoal into thumper-mod

    @ctb
    ctb committed Nov 24, 2020
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  4. various attempted fixes

    @ctb
    ctb committed Nov 24, 2020
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