Pinned Loading

1. nanoGPT-DNA nanoGPT-DNA Public

   A minimal GPT-like large language model (LLM) for DNA sequences inspired by nanoGPT. nanoGPT-DNA trains a transformer model on DNA using PyTorch to explore regulatory syntax and uncover biological …

   Python

2. AWS-scRNAseq-Nextflow AWS-scRNAseq-Nextflow Public

   Bioinformatics pipelines for scRNA-seq and RNA-seq, deployed on AWS using Nextflow, AWS Batch and Tower for cloud processing.

   Nextflow 1

3. HeartDiseaseMLInterpretation HeartDiseaseMLInterpretation Public

   Heart disease prediction model using XGBoost, with hyperparameter tuning, model evaluation, and interpretability through SHAP.

   Python

4. SimpleGenomicNextflow SimpleGenomicNextflow Public

   SimpleGenomicNextFlow provides straightforward and flexible Nextflow scripts for genomics and metagenomics tasks.

   Nextflow 2

5. AutismSketchClassifier AutismSketchClassifier Public

   This project trains a ResNet18 from scratch using TensorFlow on 50 million images from the QuickDraw dataset. The final layer embeddings are used to build a KNN classifier for autism sketches.

   Jupyter Notebook 2 1

6. CV CV Public

   This repository contains my CV, highlighting my academic background and research in bioinformatics, genomics, and the application of machine learning.

   TeX