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@dimi-lab

DIMI lab

Data science and Informatics for Multiomics Integration

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  1. dimi-lab.github.io dimi-lab.github.io Public template

    Data science and Informatics for Multiomics Integration

    HTML 2

  2. SpaFlow SpaFlow Public

    A Nextflow pipeline for QC and unsupervised clustering of spatial biology data

    Nextflow 6 2

  3. The_Handy_OMERO_Toolbox The_Handy_OMERO_Toolbox Public

    An assortment of scripts used to interface with our internal instance of OMERO and accomplish custom tasks

    Jupyter Notebook 1

Repositories

Showing 10 of 10 repositories
  • ClassyFlow Public

    In Development nextflow workflow specific to outlining approaches to building and testing ML classifiers

    dimi-lab/ClassyFlow’s past year of commit activity
    Python 0 MIT 1 1 2 Updated Oct 31, 2024
  • SpaFlow Public

    A Nextflow pipeline for QC and unsupervised clustering of spatial biology data

    dimi-lab/SpaFlow’s past year of commit activity
    Nextflow 6 MIT 2 0 0 Updated Oct 17, 2024
  • The_Handy_OMERO_Toolbox Public

    An assortment of scripts used to interface with our internal instance of OMERO and accomplish custom tasks

    dimi-lab/The_Handy_OMERO_Toolbox’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Oct 11, 2024
  • dimi-lab.github.io Public template

    Data science and Informatics for Multiomics Integration

    dimi-lab/dimi-lab.github.io’s past year of commit activity
    HTML 0 BSD-3-Clause 2 0 1 Updated Oct 7, 2024
  • TumorStromaReaction Public
    dimi-lab/TumorStromaReaction’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2024
  • drpllm Public
    dimi-lab/drpllm’s past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2024
  • Scalable_Labelled_SegMasks_To_QuPath Public

    Small nextflow pipeline to be able to take external SegMask files and load into QuPath (100k+ Segments)

    dimi-lab/Scalable_Labelled_SegMasks_To_QuPath’s past year of commit activity
    1 MIT 0 0 0 Updated Sep 12, 2024
  • Collab_Bartemes_OPSCC Public
    dimi-lab/Collab_Bartemes_OPSCC’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 19, 2024
  • digpath_msi_prediction Public
    dimi-lab/digpath_msi_prediction’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 19, 2024
  • RPAR Public

    The Rank order prediction of genes for a given set of phenotypes for mendelian and rare disease framework (RPAR)

    dimi-lab/RPAR’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 19, 2024

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