Jamroot

#
# Jamroot
#
# Copyright 2012 Darren Kessner
#
#   Licensed under the Apache License, Version 2.0 (the "License");
#   you may not use this file except in compliance with the License.
#   You may obtain a copy of the License at
#
#       http://www.apache.org/licenses/LICENSE-2.0
#
#   Unless required by applicable law or agreed to in writing, software
#   distributed under the License is distributed on an "AS IS" BASIS,
#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#   See the License for the specific language governing permissions and
#   limitations under the License.
#


import testing ; # for unit-test rule


project simrecomb
    : requirements
        <toolset>gcc:<cxxflags>-Wno-parentheses
    : default-build
        <link>static
        #<runtime-link>static
        <warnings-as-errors>on
        <warnings>all
        #<variant>profile
        <variant>release
        #<variant>debug
        #<threading>multi
    ;


lib boost_system ;
lib boost_filesystem ;


lib libsimrecomb :
    Chromosome.cpp 
    DataVector.cpp
    Genotyper.cpp
    MSFormat.cpp
    Organism.cpp 
    Population.cpp
    RecombinationMap.cpp 
    Random.cpp 
    Simulator.cpp
    SimulationController_NeutralAdmixture.cpp
    SimulationController_SingleLocusSelection.cpp
    boost_filesystem
    boost_system
    ;


unit-test ChromosomeTest : ChromosomeTest.cpp libsimrecomb ;
unit-test GenotyperTest : GenotyperTest.cpp libsimrecomb ;
unit-test DataVectorTest : DataVectorTest.cpp libsimrecomb ;
unit-test OrganismTest : OrganismTest.cpp libsimrecomb ;
unit-test PopulationTest : PopulationTest.cpp libsimrecomb ;
unit-test RandomTest : RandomTest.cpp libsimrecomb ;
unit-test RecombinationMapTest : RecombinationMapTest.cpp libsimrecomb ;
unit-test SimulatorTest : SimulatorTest.cpp libsimrecomb ;
unit-test SimulationController_NeutralAdmixture_Test : SimulationController_NeutralAdmixture_Test.cpp libsimrecomb ;
unit-test SimulationController_SingleLocusSelection_Test : SimulationController_SingleLocusSelection_Test.cpp libsimrecomb ;


run MSFormatTest.cpp libsimrecomb
    : # args
    : MSFormatTest.data/ms_format_1.txt MSFormatTest.data/ms_format_2.txt # input-files
    : # requirements
    : MSFormatTest # target name
    : # default-build
    ;


exe simrecomb : simrecomb.cpp libsimrecomb ;
exe simrecomb_aux : simrecomb_aux.cpp libsimrecomb ;
exe subsample_population : subsample_population.cpp libsimrecomb ;
exe recombine_data : recombine_data.cpp libsimrecomb ;

#exe analyze_population : analyze_population.cpp libsimrecomb boost_system boost_filesystem ;
#exe john_question : john_question.cpp libsimrecomb boost_system boost_filesystem ;
#exe test_splice : test_splice.cpp ;
#exe test_map : test_map.cpp libsimrecomb ;

install bin  
    : simrecomb simrecomb_aux subsample_population recombine_data
    : <location>bin 
      <install-dependencies>on
      <install-type>EXE
      <install-type>LIB
    ;