This is the github repository of the viromeBrowser R package.
Required packages that cannot be installed automatically are Rsamtools and Biostrings, install using following commands:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rsamtools")
BiocManager::install("Biostrings")
Installing the package from R should work using:
install.packages("viromeBrowser")
Or if there is a newer version on github:
install.packages("devtools")
library(devtools)
install_github("dnieuw/viromebrowser", build_vignette = TRUE)
Load the package using the following command:
library(viromeBrowser)
Read the vignette by running:
vignette("viromeBrowser")
Start the app by running
viromeBrowser()
The viromeBrowser logo was made with graphics from: