Updated files with 'repo_helper'.

.github/workflows/mypy.yml

@@ -31,7 +31,7 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install tox
+          python -m pip install --upgrade tox virtualenv
 
       - name: "Run mypy"
         run: "python -m tox -e mypy"

.pre-commit-config.yaml

@@ -66,11 +66,11 @@ repos:
     - id: remove-crlf
     - id: forbid-crlf
 
- - repo: https://github.com/domdfcoding/yapf-isort
-   rev: v0.5.5
+ - repo: https://github.com/repo-helper/formate
+   rev: v0.2.0
    hooks:
-    - id: yapf-isort
-      exclude: ^(doc-source/conf|__pkginfo__|make_conda_recipe|setup)\.py$
+    - id: formate
+      exclude: ^(doc-source/conf|__pkginfo__|make_conda_recipe|setup)\.(_)?py$
 
  - repo: https://github.com/domdfcoding/dep_checker
    rev: v0.4.1

CONTRIBUTING.rst

@@ -18,13 +18,13 @@ Install ``pre-commit`` with ``pip`` and install the git hook:
 Coding style
 --------------
 
-`yapf-isort <https://pypi.org/project/yapf-isort/>`_ is used for code formatting.
+`formate <https://formate.readthedocs.io>`_ is used for code formatting.
 
 It can be run manually via ``pre-commit``:
 
 .. code-block:: bash
 
-	$ pre-commit run yapf-isort -a
+	$ pre-commit run formate -a
 
 
 Or, to run the complete autoformatting suite:

doc-source/contributing.rst

@@ -18,13 +18,13 @@ Install ``pre-commit`` with ``pip`` and install the git hook:
 Coding style
 --------------
 
-`yapf-isort <https://pypi.org/project/yapf-isort/>`_ is used for code formatting.
+`formate <https://formate.readthedocs.io>`_ is used for code formatting.
 
 It can be run manually via ``pre-commit``:
 
 .. prompt:: bash
 
-	pre-commit run yapf-isort -a
+	pre-commit run formate -a
 
 
 Or, to run the complete autoformatting suite:

formate.toml

@@ -0,0 +1,55 @@
+[hooks]
+dynamic_quotes = 10
+collections-import-rewrite = 20
+reformat-generics = 40
+noqa-reformat = 60
+ellipsis-reformat = 70
+
+[config]
+indent = "\t"
+line_length = 115
+
+[hooks.yapf]
+priority = 30
+
+[hooks.isort]
+priority = 50
+
+[hooks.yapf.kwargs]
+yapf_style = ".style.yapf"
+
+[hooks.isort.kwargs]
+line_length = 115
+indent = "\"\t\t\""
+multi_line_output = 8
+import_heading_stdlib = "stdlib"
+import_heading_thirdparty = "3rd party"
+import_heading_firstparty = "this package"
+import_heading_localfolder = "this package"
+balanced_wrapping = false
+lines_between_types = 0
+use_parentheses = true
+remove_redundant_aliases = true
+default_section = "THIRDPARTY"
+known_third_party = [
+    "cftime",
+    "chemistry_tools",
+    "coincidence",
+    "coverage",
+    "coverage_pyver_pragma",
+    "docker",
+    "domdf_python_tools",
+    "github",
+    "importlib_resources",
+    "jinja2",
+    "numpy",
+    "pymassspec",
+    "pytest",
+    "pytest_cov",
+    "pytest_randomly",
+    "pytest_rerunfailures",
+    "pytest_timeout",
+    "requests",
+    "sdjson",
+]
+known_first_party = "pyms_nist_search"

pyproject.toml

@@ -1,3 +1,3 @@
 [build-system]
-requires = ["setuptools>=40.6.0", "wheel>=0.34.2"]
+requires = [ "setuptools>=40.6.0", "wheel>=0.34.2",]
 build-backend = "setuptools.build_meta"

tox.ini

@@ -125,6 +125,7 @@ count = True
 plugins = coverage_pyver_pragma
 
 [coverage:report]
+fail_under = 80
 exclude_lines =
     raise AssertionError
     raise NotImplementedError
@@ -133,7 +134,6 @@ exclude_lines =
     if TYPE_CHECKING:
     if typing.TYPE_CHECKING:
     if __name__ == .__main__.:
-    :[\n\s]*\.\.\.
 
 [check-wheel-contents]
 ignore = W002