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simulate the effects of divergent selection and assortative mating on patterns of genome differentiation and linkage disequilibrium
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Phase3.pdf
README.md
asmatsel.H
func.C
main.C
map2.txt
map2S.txt
mkinfile.R
plotAsmatselMultSets.R

README.md

asmatsel

simulate the effects of divergent selection and assortative mating on patterns of genome differentiation and linkage disequilibrium

files: main.C func.C asmatsel.H; to compile, try g++ -Wall -O2 -o asmatsel main.C func.C -lm -lgsl -lgslcblas (requires GSL)

to see options, type ./asmatsel without any arguments

examples for running a simulation: ./asmatsel -i map2.txt -l 1600 -u 0 -a 0.9 -o run2_a09.out or ./asmatsel -i map2S.txt -l 1600 -u 0 -s 0.8 -o run2S_s08.out

input files (map2.txt and map2S.txt): can be generated with mkinfile.R

to make plot of results: plotAsmatselMultSets.R (e.g., to make Phase3.pdf)

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