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@dozmorovlab

Dozmorov Lab

Genomics, bionformatics, computational biology, 3D genome, Hi-C

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  1. excluderanges excluderanges Public

    Genomic coordinates of problematic genomic regions as GRanges

    R 28 2

  2. TADCompare TADCompare Public

    Package for analysis and characterization of differential TADs

    R 22 2

  3. HiCcompare HiCcompare Public

    Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

    R 19 3

  4. multiHiCcompare multiHiCcompare Public

    Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

    R 8 8

  5. SpectralTAD SpectralTAD Public

    TAD Calling using spectral clustering in R

    R 8 3

  6. preciseTAD preciseTAD Public

    preciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution

    R 7

Repositories

Showing 10 of 23 repositories
  • scHiCcompare Public

    Differential analysis of scHi-C data. Includes imputation and normalization steps

    dozmorovlab/scHiCcompare’s past year of commit activity
    R 0 0 0 0 Updated Nov 6, 2024
  • deep-learning-with-r-notebooks Public Forked from YTLogos/deep-learning-with-r-notebooks
    dozmorovlab/deep-learning-with-r-notebooks’s past year of commit activity
    HTML 0 MIT 7 0 0 Updated Oct 23, 2024
  • dozmorovlab.github.io Public

    GitHub pages for dozmorovlab web site

    dozmorovlab/dozmorovlab.github.io’s past year of commit activity
    CSS 1 0 0 0 Updated Oct 9, 2024
  • BIOS524_videos Public

    Lectures for the BIOS-524 course

    dozmorovlab/BIOS524_videos’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 1, 2024
  • DEXseq Public

    DEXseq analysis scripts

    dozmorovlab/DEXseq’s past year of commit activity
    R 1 MIT 0 0 0 Updated Apr 20, 2024
  • PDXHiC_supplemental Public

    Supplemental scripts for the PDX Hi-C paper

    dozmorovlab/PDXHiC_supplemental’s past year of commit activity
    R 2 3 0 0 Updated Apr 2, 2024
  • excluderanges Public

    Genomic coordinates of problematic genomic regions as GRanges

    dozmorovlab/excluderanges’s past year of commit activity
    R 28 2 1 0 Updated Dec 4, 2023
  • Workflows Public
    dozmorovlab/Workflows’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 6, 2023
  • SpectralTAD Public

    TAD Calling using spectral clustering in R

    dozmorovlab/SpectralTAD’s past year of commit activity
    R 8 3 2 0 Updated Aug 29, 2023
  • HiCcompare Public

    Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

    dozmorovlab/HiCcompare’s past year of commit activity
    R 19 3 1 0 Updated Jun 4, 2023
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