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  1. col-bwt col-bwt Public

    Pangenomic index computing pseudo matching lengths and chain staistics, supporting seed chaining in linear time with respect to query length.

    C++

  2. r-index-f r-index-f Public

    R-Index-F Library for Pattern Matching

    C++ 13 1

  3. r-permute r-permute Public

    O(r)-space lookup table for "runny" permutations

    C++ 1

  4. mohsenzakeri/Movi mohsenzakeri/Movi Public

    Fast and cache-efficient full-text pangenome index

    C++ 25 4