Fix nf-core#878

drpatelh · Mar 16, 2023 · 86da5f2 · 86da5f2
1 parent 4656b56
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
+- [[#878](https://github.com/nf-core/rnaseq/pull/878)] - Allow tabs in fasta header when creating decoys for salmon index
 - [[#934](https://github.com/nf-core/rnaseq/pull/934)] - Union of `ext.args` and `params.extra_star_align_args` prevents parameter clashes in the STAR module
 - [[#940](https://github.com/nf-core/rnaseq/issues/940)] - Bugfix in `salmon_summarizedexperiment.r` to ensure `rbind` doesn't fail when `rowdata` has no `tx` column. See ([[#941](https://github.com/nf-core/rnaseq/pull/941)]) for details.
 - [[#944](https://github.com/nf-core/rnaseq/issues/944)] - Read clipping using clip_r1, clip_r2, three_prime_clip_r1, three_prime_clip_r2 disabled in 3.10

diff --git a/modules.json b/modules.json
@@ -127,7 +127,7 @@
                     },
                     "salmon/index": {
                         "branch": "master",
-                        "git_sha": "94b06f1683ddf893cf06525f6e7f0573ad8fbf83",
+                        "git_sha": "cfef21995228c66af535b14c5efae1461ffb8981",
                         "installed_by": ["fastq_subsample_fq_salmon"]
                     },
                     "salmon/quant": {

diff --git a/modules/nf-core/salmon/index/main.nf b/modules/nf-core/salmon/index/main.nf