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Bugfix #2904 main_v11.1-ref R path #2910

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@hsoh-u hsoh-u commented Jun 7, 2024

Expected Differences

No difference (no failures with unit test)

  • Do these changes introduce new tools, command line arguments, or configuration file options? [Yes or No]

    If yes, please describe:

  • Do these changes modify the structure of existing or add new output data types (e.g. statistic line types or NetCDF variables)? [Yes or No]

    If yes, please describe:

Pull Request Testing

  • Describe testing already performed for these changes:

  • Recommend testing for the reviewer(s) to perform, including the location of input datasets, and any additional instructions:

  • Do these changes include sufficient documentation updates, ensuring that no errors or warnings exist in the build of the documentation? [Yes or No]

  • Do these changes include sufficient testing updates? [Yes or No]

  • Will this PR result in changes to the MET test suite? [Yes or No]

    If yes, describe the new output and/or changes to the existing output:

  • Will this PR result in changes to existing METplus Use Cases? [Yes or No]

    If yes, create a new Update Truth METplus issue to describe them.

  • Do these changes introduce new SonarQube findings? [Yes or No]

    If yes, please describe:

  • Please complete this pull request review by [Fill in date].

Pull Request Checklist

See the METplus Workflow for details.

  • Review the source issue metadata (required labels, projects, and milestone).
  • Complete the PR definition above.
  • Ensure the PR title matches the feature or bugfix branch name.
  • Define the PR metadata, as permissions allow.
    Select: Reviewer(s) and Development issue
    Select: Milestone as the version that will include these changes
    Select: Coordinated METplus-X.Y Support project for bugfix releases or MET-X.Y.Z Development project for official releases
  • After submitting the PR, select the ⚙️ icon in the Development section of the right hand sidebar. Search for the issue that this PR will close and select it, if it is not already selected.
  • After the PR is approved, merge your changes. If permissions do not allow this, request that the reviewer do the merge.
  • Close the linked issue and delete your feature or bugfix branch from GitHub.

Expected Differences

No difference (no failures with unit test)

  • Do these changes introduce new tools, command line arguments, or configuration file options? [No]

    If yes, please describe:

  • Do these changes modify the structure of existing or add new output data types (e.g. statistic line types or NetCDF variables)? [No]

    If yes, please describe:

Pull Request Testing

  • Describe testing already performed for these changes:

Ran the nightly build

  • Recommend testing for the reviewer(s) to perform, including the location of input datasets, and any additional instructions:

N/A

  • Do these changes include sufficient documentation updates, ensuring that no errors or warnings exist in the build of the documentation? [No]

  • Do these changes include sufficient testing updates? [No]

  • Will this PR result in changes to the MET test suite? [No]

    If yes, describe the new output and/or changes to the existing output:

  • Will this PR result in changes to existing METplus Use Cases? [No]

    If yes, create a new Update Truth METplus issue to describe them.

  • Do these changes introduce new SonarQube findings? [No]

    If yes, please describe:

  • Please complete this pull request review by 6/07/2024].

Pull Request Checklist

See the METplus Workflow for details.

  • Review the source issue metadata (required labels, projects, and milestone).
  • Complete the PR definition above.
  • Ensure the PR title matches the feature or bugfix branch name.
  • Define the PR metadata, as permissions allow.
    Select: Reviewer(s) and Development issue
    Select: Milestone as the version that will include these changes
    Select: Coordinated METplus-X.Y Support project for bugfix releases or MET-X.Y.Z Development project for official releases
  • After submitting the PR, select the ⚙️ icon in the Development section of the right hand sidebar. Search for the issue that this PR will close and select it, if it is not already selected.
  • After the PR is approved, merge your changes. If permissions do not allow this, request that the reviewer do the merge.
  • Close the linked issue and delete your feature or bugfix branch from GitHub.

github-actions bot and others added 3 commits March 27, 2024 10:41
* Add user execute permissions to compile script - main_v11.1 (#2740)

* Changing -j to "-j 5" as the recommended value for MAKE_ARGS

* Per #2761, update the MET development environment after upgrading seneca to debian bookworm.

* Per #2761, define runtime python version for testing  rather than using the default version which no longer exists in /usr/local

* Per #2761, fix  setting ci-skip-all

* Per #2761, patching test_util.R to use the -C command line option for ncdiff.

* #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars

* #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL

* #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST)

* #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL

* Bugfix #2760 main_v11.1 --enable-python (#2767)

* #2755 Added a header count and checking header count instead of using header id (hid)

* Bugfix #2782 main_v11.1 MASSDEN (#2784)

* Per #2782, update the multiple matching records warning message to include the table number for each record.

* Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48.

* Per #2782 tweak variable naming convention.

* Removing ${MAKE_ARGS} in some locations

Removing ${MAKE_ARGS} from "make install" and "make test" for MET.  Removing "met" prefix from met.configure.log because we really need config.log for any detail.  It is confusing to have met.configure.log when that does not contain useful information.

* Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX

* Feature #2796 main_v11.1 gha node20 (#2798)

* Per #2796, update versions of actions to fix the node 16 to 20 warning message.

* Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated.

* Create 11.1.0_casper

* Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch.

* Update the pull request template to include a question about expected impacts to existing METplus Use Cases.

* Bugfix #2833 main_v11.1 azimuth (#2834)

* Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids.

* Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch.

---------

Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>

---------

Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@ucar.edu>
* Add user execute permissions to compile script - main_v11.1 (#2740)

* Changing -j to "-j 5" as the recommended value for MAKE_ARGS

* Per #2761, update the MET development environment after upgrading seneca to debian bookworm.

* Per #2761, define runtime python version for testing  rather than using the default version which no longer exists in /usr/local

* Per #2761, fix  setting ci-skip-all

* Per #2761, patching test_util.R to use the -C command line option for ncdiff.

* #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars

* #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL

* #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST)

* #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL

* Bugfix #2760 main_v11.1 --enable-python (#2767)

* #2755 Added a header count and checking header count instead of using header id (hid)

* Bugfix #2782 main_v11.1 MASSDEN (#2784)

* Per #2782, update the multiple matching records warning message to include the table number for each record.

* Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48.

* Per #2782 tweak variable naming convention.

* Removing ${MAKE_ARGS} in some locations

Removing ${MAKE_ARGS} from "make install" and "make test" for MET.  Removing "met" prefix from met.configure.log because we really need config.log for any detail.  It is confusing to have met.configure.log when that does not contain useful information.

* Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX

* Feature #2796 main_v11.1 gha node20 (#2798)

* Per #2796, update versions of actions to fix the node 16 to 20 warning message.

* Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated.

* Create 11.1.0_casper

* Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch.

* Update the pull request template to include a question about expected impacts to existing METplus Use Cases.

* Bugfix #2833 main_v11.1 azimuth (#2834)

* Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids.

* Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch.

---------

Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>

* Feature #2379 main_v11.1 sonarqube GHA (#2848)

* Per #2379, migrating largely the same changes for #2379 into the main_v11.1 branch. The difference is that --enable-all is not used since that is not a valid configuration option for MET version 11.1.0.

* Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ.

* Feature #2379 main_v11.1 sonarqube updates (#2851)

* Feature #2379 main_v11.1 single_sq_project (#2866)

* Bugfix 2867 point2grid qc flag main v11.1 (#2874)

* #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP

* #2867 Added get_nc_att_values_

* #2867 Added get_nc_att_values

* #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values

---------

Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>

---------

Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@ucar.edu>
Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com>
@hsoh-u hsoh-u added this to the MET 11.1.2 (bugfix) milestone Jun 7, 2024
@hsoh-u hsoh-u requested a review from georgemccabe June 7, 2024 17:15
@hsoh-u hsoh-u linked an issue Jun 7, 2024 that may be closed by this pull request
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hsoh-u commented Jun 7, 2024

No need to merge

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Update the R path on seneca
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