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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 233 repositories
  • s3_upload Public

    Uploads Illumina sequencing runs into Amazon S3 storage

    eastgenomics/s3_upload’s past year of commit activity
    Python 0 MIT 0 5 1 Updated Oct 10, 2024
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor’s past year of commit activity
    Python 1 MIT 1 20 0 Updated Oct 10, 2024
  • eggd_vep_uranus_config Public

    Json configuration file for the implementation of VEP for the MYE assay.

    eastgenomics/eggd_vep_uranus_config’s past year of commit activity
    0 0 0 0 Updated Oct 9, 2024
  • eggd_vcf_rescue Public
    eastgenomics/eggd_vcf_rescue’s past year of commit activity
    Shell 2 MIT 0 0 0 Updated Oct 9, 2024
  • RD_requests Public
    eastgenomics/RD_requests’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 8, 2024
  • eggd_dias_single_workflow Public

    Workflow definition for Dias single

    eastgenomics/eggd_dias_single_workflow’s past year of commit activity
    2 0 0 0 Updated Oct 8, 2024
  • clinvar_submissions Public
    eastgenomics/clinvar_submissions’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 7, 2024
  • phoenix Public

    Automated annotation resource updates

    eastgenomics/phoenix’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 4, 2024
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 3 2 Updated Oct 4, 2024
  • eggd_arriba Public
    eastgenomics/eggd_arriba’s past year of commit activity
    0 0 0 0 Updated Oct 4, 2024
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