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Merge pull request #1575 from hajgato/hmmer_update
{bio} [intel-2015a] HMMER 3.1b2 (REVIEW)
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## | ||
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild | ||
# | ||
# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA | ||
# Authors:: Nils Christian <nils.christian@uni.lu>, Fotis Georgatos <fotis@cern.ch> | ||
# License:: MIT/GPL | ||
# $Id$ | ||
# | ||
# This work implements a part of the HPCBIOS project and is a component of the policy: | ||
# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html | ||
## | ||
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easyblock = 'ConfigureMake' | ||
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name = 'HMMER' | ||
version = '3.1b2' | ||
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homepage = 'http://hmmer.janelia.org/' | ||
description = """HMMER is used for searching sequence databases for homologs of protein sequences, | ||
and for making protein sequence alignments. It implements methods using probabilistic models | ||
called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other | ||
sequence alignment and database search tools based on older scoring methodology, | ||
HMMER aims to be significantly more accurate and more able to detect remote homologs | ||
because of the strength of its underlying mathematical models. In the past, this strength | ||
came at significant computational expense, but in the new HMMER3 project, HMMER is now | ||
essentially as fast as BLAST.""" | ||
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toolchain = {'name': 'intel', 'version': '2015a'} | ||
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sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] | ||
source_urls = ['http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] | ||
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installopts = ' && cd easel && make install' | ||
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sanity_check_paths = { | ||
'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", | ||
"esl-alimap", "esl-cluster", "esl-mask"]], | ||
'dirs': [] | ||
} | ||
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runtest = 'check' | ||
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moduleclass = 'bio' |