@kozo2 kozo2 released this Mar 13, 2018 · 62 commits to master since this release

Assets 2

(2018-03-13)

If you want to download E-Cell4 whl files, see https://pypi.python.org/pypi/ecell

Features

  • Remove VacantType::getInstance() (57bc37fe)
  • Add VacantType::allocate (bd9c34b9)
  • Add OneToManyMap (27c21ad9)
  • #183 Add an utility to generate equations in the LaTeX format (08803d86)
  • #129 #139 Dump a brief description of the given Model (0adc4e97)
  • extras::parse_version_information allows boost::regex and std::tr1::regex (1a916a60)
  • Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ad14e335)
  • Add num_neighbors() function to LatticeSpace (ab9b6b36)
  • Add the implementations of can_move() and move() to OffLatticeSpace (6dded0e9)
  • Add a test for ParticleSpace (cd15c2b9)
  • Add the default behavior for ParticleSpace::volume (dc8e5ce3)
  • #159 Add TimingTrajectoryObserver (b8047eac)
  • Add OffLatticeSpace class (a137eac1)
  • Add VoxelSpaceBase class (db14ad62)
  • Extend CSVObserver(s) for users to set own format (4bb9f5d7)
  • #146 Save std::string with no limitation in its length (413ad479)
  • #146 Save std::string with no limitation in its length (23297155)
  • Add the DataSource module (c681497e)

Bug Fixes

  • Add an include line to VoxelSpaceBase.hpp (4e6cf058)
  • Use get_location_serial in SpatiocyteWorld (8b5303f5)
  • Fix a null pointer bug (ef7be264)
  • Avoid dangerous default value, [] and {} (a1cb436c)
  • TransparentCallback inherits Callback class (8624ef1c)
  • #169 A single variable could be parsed as a rate law (150f294e)
  • Revert the HDF5 module (5de49b2b)
  • #173 revert HDF5Writers (except LatticeSpaceHDF5Writer) to v4.0.8 (15532882)
  • Do not forget to add a new file (213707f6)
  • The function must return some value (13ea320c)
  • Fix the bug of OffLatticeSpace::move_to_neighbor() (170a611d)
  • Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (133dcd0b)
  • Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (44b054a1)
  • Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (facd73ff)
  • Add a patch when merging (f2593dc4)
  • H5std_string in struct doesn't work with scalar DataSet (2591e25b)
  • Fix the bug of VoxelSpaceBase (99f3a3f3)
  • Donot forget fi (0492ddfb)
  • Can not perform a '--user' in the virtualenv (bae8ccd8)
  • python is not placed at /usr/bin on linux (6ab791bd)
  • Travis does not support Python3 on osx (7e4ba8a2)
  • Oops! Fix a silly typo (8ae7b224)
  • Add an unnecessary option when installing (87c44b36)
  • Fix a wrong switching about the availability of shared libraries (47fd0855)
  • Fix the walk_on_surface() (d23a6595)
  • Donot search another neighbor once finding the one (092597cf)
  • Uncomment LatticeSpace_test (0588a40e)
  • Remove needless functions (7698d214)
  • Allow to deepcopy ParseObj (c78d45a8)

@kozo2 kozo2 released this Jan 24, 2018

Assets 2

(2018-01-24)

If you want to download E-Cell4 whl files, see https://pypi.python.org/pypi/ecell

Features

  • #183 Add an utility to generate equations in the LaTeX format (08803d86)
  • #129 #139 Dump a brief description of the given Model (0adc4e97)
  • extras::parse_version_information allows boost::regex and std::tr1::regex (1a916a60)
  • Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ad14e335)
  • Add num_neighbors() function to LatticeSpace (ab9b6b36)
  • Add the implementations of can_move() and move() to OffLatticeSpace (6dded0e9)
  • Add a test for ParticleSpace (cd15c2b9)
  • Add the default behavior for ParticleSpace::volume (dc8e5ce3)
  • #159 Add TimingTrajectoryObserver (b8047eac)
  • Add OffLatticeSpace class (a137eac1)
  • Add VoxelSpaceBase class (db14ad62)
  • Extend CSVObserver(s) for users to set own format (4bb9f5d7)
  • #146 Save std::string with no limitation in its length (413ad479)
  • #146 Save std::string with no limitation in its length (23297155)
  • Add the DataSource module (c681497e)

Bug Fixes

  • Fix a null pointer bug (ef7be264)
  • Avoid dangerous default value, [] and {} (a1cb436c)
  • TransparentCallback inherits Callback class (8624ef1c)
  • #169 A single variable could be parsed as a rate law (150f294e)
  • Revert the HDF5 module (5de49b2b)
  • #173 revert HDF5Writers (except LatticeSpaceHDF5Writer) to v4.0.8 (15532882)
  • Do not forget to add a new file (213707f6)
  • The function must return some value (13ea320c)
  • Fix the bug of OffLatticeSpace::move_to_neighbor() (170a611d)
  • Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (133dcd0b)
  • Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (44b054a1)
  • Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (facd73ff)
  • Add a patch when merging (f2593dc4)
  • H5std_string in struct doesn't work with scalar DataSet (2591e25b)
  • Fix the bug of VoxelSpaceBase (99f3a3f3)
  • Donot forget fi (0492ddfb)
  • Can not perform a '--user' in the virtualenv (bae8ccd8)
  • python is not placed at /usr/bin on linux (6ab791bd)
  • Travis does not support Python3 on osx (7e4ba8a2)
  • Oops! Fix a silly typo (8ae7b224)
  • Add an unnecessary option when installing (87c44b36)
  • Fix a wrong switching about the availability of shared libraries (47fd0855)
  • Fix the walk_on_surface() (d23a6595)
  • Donot search another neighbor once finding the one (092597cf)
  • Uncomment LatticeSpace_test (0588a40e)

@kozo2 kozo2 released this Apr 8, 2017 · 258 commits to master since this release

Assets 2

(2017-04-12)

If you want to download E-Cell4 whl files, see https://pypi.python.org/pypi/ecell

Bug Fixes

  • The version in Windows HDF5 is still 4.1.0 #177

@kozo2 kozo2 released this Apr 6, 2017 · 261 commits to master since this release

Assets 2

(2017-04-07)

You can upgrade E-Cell4 with pip install -U ecell.
If you want to download E-Cell4 whl files, please see https://pypi.python.org/pypi/ecell/4.1.1

The whl files for Windows depend on HDF5 version 1.8.17.

Bug Fixes

  • HDF5, corrupted double-linked list #173

@kozo2 kozo2 released this Mar 17, 2017 · 266 commits to master since this release

Assets 9

(2017-03-17)

If you want to download E-Cell4 whl files for Linux, please see https://github.com/ecell/ecell4-manylinux/releases/tag/v4.1.0

The wheels for Windows depend on HDF5 version 1.8.17.

Features

  • extras::parse_version_information allows boost::regex and std::tr1::regex (1a916a6)
  • Add the get_neighbor() and move_to_neighbor() to OffLatticeSpace (ad14e33)
  • Add num_neighbors() function to LatticeSpace (ab9b6b3)
  • Add the implementations of can_move() and move() to OffLatticeSpace (6dded0e)
  • Add a test for ParticleSpace (cd15c2b)
  • Add the default behavior for ParticleSpace::volume (dc8e5ce)
  • #159 Add TimingTrajectoryObserver (b8047ea)
  • Add OffLatticeSpace class (a137eac)
  • Add VoxelSpaceBase class (db14ad6)
  • Extend CSVObserver(s) for users to set own format (4bb9f5d)
  • #146 Save std::string with no limitation in its length (413ad47)
  • Add the DataSource module (c681497)

Bug Fixes

  • The function must return some value (13ea320)
  • Fix the bug of OffLatticeSpace::move_to_neighbor() (170a611)
  • Rename get_voxel(coordinate) to get_voxel_at(coordinate) in the python world (44b054a)
  • Fix a critical bug related to ParticleSpaceCellListImpl::remove_particle (facd73f)
  • Add a patch when merging (f2593dc)
  • H5std_string in struct doesn't work with scalar DataSet (2591e25)
  • Fix the bug of VoxelSpaceBase (99f3a3f)
  • Add an unnecessary option when installing (87c44b3)
  • Fix a wrong switching about the availability of shared libraries (47fd085)
  • Fix the walk_on_surface() (d23a659)
  • Donot search another neighbor once finding the one (092597c)
  • Remove needless functions (7698d21)
  • Allow to deepcopy ParseObj (c78d45a)
Nov 9, 2016
Merge pull request #152 from ecell/temp
update version 4.0.5
Aug 9, 2016
update the version to 4.0.4