Skip to content

Commit

Permalink
Merge pull request #595 from edmcouncil/GitHub-594
Browse files Browse the repository at this point in the history 
GitHub-594 - Possibly broken URLs in IDMP Prod literals
  • Loading branch information
@mereolog
mereolog authored May 16, 2024
2 parents 548f0e0 + 97af9ac commit 57ef748
Show file tree
Hide file tree
Showing 2 changed files with 5 additions and 13 deletions.
6 changes: 3 additions & 3 deletions ISO/ISO11238-Substances.rdf
View file
Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,7 @@
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/ISO1087-TerminologyScience/"/>
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/ISO1087-VocabularyForTermsAndDefinitions/"/>
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/MultipleVocabularyFacility/"/>
<owl:versionIRI rdf:resource="https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240401/ISO11238-Substances/"/>
<owl:versionIRI rdf:resource="https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240501/ISO11238-Substances/"/>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20221101/ISO11238-Substances.rdf version of this ontology was modified to relax the restriction on the property isStoichiometric with respect to chemical substances to optional from required (IDMP-380), and then reversed per the SME team and to conform with the IDMP standard.</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20221201/ISO11238-Substances.rdf version of this ontology was modified to relax the restriction on the property hasStructure with respect to substances, single substances, and moieties to optional from at most one value, to allow for cases where there may be multiples, especially if mapping content from multiple repositories (IDMP-GitHub-244) to add definitions for certain stereochemistry nominals where they were missing (IDMP-GitHub-243), and to refactor concepts including substance, moiety, and add physical substance in order to distinguish specifications for substances, which is the primary perspective of the IDMP standards from physical substances, and rename substance constituency to substance composition, which is better understood by the user community. (IDMP-405)</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20230201/ISO11238-Substances.rdf version of this ontology was modified to integrate a revised manufactured item and packaging strategy for UC-2. (IDMP-465)</skos:changeNote>
Expand All @@ -111,7 +111,7 @@
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20230901/ISO11238-Substances.rdf version of this ontology was augmented to build out the definition of protein substance to complete the requirements specified in clause 7.4 of the ISO 11238 standard and related information in ISO/TS 19844 (IDMP-594), to build out the definition of polymer substance to complete the requirements specified in clause 7.6 of the ISO 11238 standard and related information in ISO/TS 19844 (IDMP-673), and to add details for Organism (IDMP-640).</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20231001/ISO11238-Substances.rdf version of this ontology was augmented to build out the definition of mixture to complete the requirements specified in clause 7.8 of the ISO 11238 standard and related information in ISO/TS 19844 (IDMP-675), to assist in addressing gaps with respect to the top-level class definitions and relationships in the complete model figures for authorized and investigational medicinal product in Annex A and Annex B, respectively, in ISO 11615 (IDMP-677), and to update the conformance points to be current (IDMP-322).</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20231201/ISO11238-Substances.rdf version of this ontology was augmented to build out the definition of source material (Figure 17 in the ISO standard) to support representation of biologics (IDMP-713) and to normalize the use of hasTextualName from MVF rather than from LCC.</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240301/ISO11238-Substances.rdf version of this ontology was augmented to add SKOS prefLabels for elements that have multiple labels (IDMP-734), to correct a wrong prefix for ReferenceSource, to make starting and resultant material roles disjoint, and clean up URIs that had an erroneous final slash.</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240301/ISO11238-Substances.rdf version of this ontology was augmented to add SKOS prefLabels for elements that have multiple labels (IDMP-734), to correct a wrong prefix for ReferenceSource, to make starting and resultant material roles disjoint, and clean up URIs that had an erroneous final slash or were ill-formed.</skos:changeNote>
<idmp-chg:hasMaturityLevel rdf:resource="&idmp-chg;Release"/>
<cmns-av:copyright>Copyright (c) 2022-2024 EDM Council, Inc.</cmns-av:copyright>
<cmns-av:copyright>Copyright (c) 2022-2024 Pistoia Alliance, Inc.</cmns-av:copyright>
Expand Down Expand Up @@ -1346,7 +1346,7 @@
<cmns-dsg:hasDescription>controlled vocabulary for representing the arrangement of atoms for describing chemical structures</cmns-dsg:hasDescription>
<mvf:hasLanguage rdf:resource="&lcc-639-1;English"/>
<mvf:hasTextualName>ISO 11238 Structural Representation vocabulary</mvf:hasTextualName>
<mvf:hasURI rdf:datatype="&xsd;anyURI">https://spec.pistoiaalliance.org/idmp/ontology/ISO/ISO11238-Substances/idmp-sub;ISO11238-StructuralRepresentationVocabulary</mvf:hasURI>
<mvf:hasURI rdf:datatype="&xsd;anyURI">https://spec.pistoiaalliance.org/idmp/ontology/ISO/ISO11238-Substances/ISO11238-StructuralRepresentationVocabulary</mvf:hasURI>
</owl:NamedIndividual>

<owl:NamedIndividual rdf:about="&idmp-sub;ISO11238-SubstanceNameClassifierVocabulary">
Expand Down
12 changes: 2 additions & 10 deletions ISO/ISO11615-MedicinalProducts.rdf
View file
Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,7 @@
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/ISO1087-TerminologyScience/"/>
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/ISO1087-VocabularyForTermsAndDefinitions/"/>
<owl:imports rdf:resource="https://www.omg.org/spec/MVF/MultipleVocabularyFacility/"/>
<owl:versionIRI rdf:resource="https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240401/ISO11615-MedicinalProducts/"/>
<owl:versionIRI rdf:resource="https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240501/ISO11615-MedicinalProducts/"/>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20221001/ISO11615-MedicinalProducts.rdf version of this ontology was modified to rename &apos;ingredient role&apos;s to ingredients for clarification and refine the restrictions relating ingredients to pharmaceutical products and manufactured items per discussion at the Pistoia Alliance Conference Workshop on 3 November 2022 (IDMP-298). It was also extended to include concepts such as process, manufacturing process, process identifier, batch, batch identifier, lot, lot number, and others required in support of the regulatory to manufacturing bridge use case.</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20221201/ISO11615-MedicinalProducts.rdf version of this ontology was modified to refactor concepts including substance, moiety, and add physical substance in order to distinguish specifications for substances, which is the primary perspective of the IDMP standards from physical substances, and rename product constituency to product composition, which is better understood by the user community, and to move a couple of restrictions from ingredient to substance, including strength and whether or not that substance is potentially allergenic. (IDMP-405)</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20230201/ISO11615-MedicinalProducts.rdf version of this ontology was modified to integrate additional manufacturing and packaging details required for UC-2 (IDMP-465), to make manufactured item and pharmaceutical product disjoint, but both product specifications (IDMP-466), to change the status of this ontology to &apos;release&apos; (IDMP-525), to add content related to dose forms (IDMP-531, IDMP-538), and to complete the set of ingredient roles specified in the implementation guide for ISO 11615 (IDMP-304).</skos:changeNote>
Expand All @@ -122,7 +122,7 @@
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20230901/ISO11615-MedicinalProducts.rdf version of this ontology was modified to add package components, devices, and physical characteristics (IDMP-659), to eliminate default codes on Ingredient and InactiveIngredient (IDMP-634), and add characteristics for target populations (IDMP-640).</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20231001/ISO11615-MedicinalProducts.rdf version of this ontology was modified to correct definitions to be compliant with IDMP-O policies (GitHub-501), fill in gaps with respect to the top-level class definitions and relationships in the complete model figures for authorized and investigational medicinal product in Annex A and Annex B, respectively, in ISO 11615 (IDMP-677), and to update the conformance points to be current (IDMP-322).</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20231201/ISO11615-MedicinalProducts.rdf version of this ontology was modified to add content from ISO 11615 that was incomplete but required for representation of jurisdiction-agnostic medicinal products (IDMP-726).</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240301/ISO11615-MedicinalProducts.rdf version of this ontology was augmented to add SKOS prefLabels for elements that have multiple labels (IDMP-734), and modified to clean up URIs that had an erroneous final slash.</skos:changeNote>
<skos:changeNote>The https://spec.pistoiaalliance.org/idmp/ontology/ISO/20240301/ISO11615-MedicinalProducts.rdf version of this ontology was augmented to add SKOS prefLabels for elements that have multiple labels (IDMP-734), and modified to clean up URIs that had an erroneous final slash or do not resolve reliably.</skos:changeNote>
<idmp-chg:hasMaturityLevel rdf:resource="&idmp-chg;Release"/>
<cmns-av:copyright>Copyright (c) 2022-2024 EDM Council, Inc.</cmns-av:copyright>
<cmns-av:copyright>Copyright (c) 2022-2024 Pistoia Alliance, Inc.</cmns-av:copyright>
Expand Down Expand Up @@ -1021,7 +1021,6 @@ d) the assignment of a unique medicinal product batch identifier (BAID2) to reli
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-ST"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.9</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_0000014</cmns-av:adaptedFrom>
<cmns-av:synonym xml:lang="en-US">color</cmns-av:synonym>
<cmns-av:synonym xml:lang="en-GB">colour</cmns-av:synonym>
</owl:Class>
Expand Down Expand Up @@ -1417,7 +1416,6 @@ d) the assignment of a unique medicinal product batch identifier (BAID2) to reli
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.4</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000001595</cmns-av:adaptedFrom>
<cmns-av:synonym>depth</cmns-av:synonym>
</owl:Class>

Expand All @@ -1431,7 +1429,6 @@ d) the assignment of a unique medicinal product batch identifier (BAID2) to reli
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label>diameter characteristic</rdfs:label>
<dct:source rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000001334</dct:source>
<skos:definition>length physical characteristic which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.</skos:definition>
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
Expand Down Expand Up @@ -1542,7 +1539,6 @@ d) the assignment of a unique medicinal product batch identifier (BAID2) to reli
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.2</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000000119</cmns-av:adaptedFrom>
<cmns-av:synonym>height</cmns-av:synonym>
</owl:Class>

Expand Down Expand Up @@ -4431,7 +4427,6 @@ g) therapeutic indication(s) as authorized for the medicinal product.</skos:note
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-ST"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.8</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_0000052</cmns-av:adaptedFrom>
</owl:Class>

<owl:Class rdf:about="&idmp-mprd;ShelfLife">
Expand Down Expand Up @@ -4943,7 +4938,6 @@ g) therapeutic indication(s) as authorized for the medicinal product.</skos:note
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.6</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000000918</cmns-av:adaptedFrom>
<cmns-av:synonym>volume</cmns-av:synonym>
</owl:Class>

Expand All @@ -4961,7 +4955,6 @@ g) therapeutic indication(s) as authorized for the medicinal product.</skos:note
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.5</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000000128</cmns-av:adaptedFrom>
<cmns-av:synonym>weight</cmns-av:synonym>
</owl:Class>

Expand All @@ -4979,7 +4972,6 @@ g) therapeutic indication(s) as authorized for the medicinal product.</skos:note
<idmp-dtp:isEncodedAs rdf:resource="&idmp-dtp;DatatypeCode-PQ"/>
<idmp-cmpl:hasConformanceToISOLevel rdf:resource="&idmp-cmpl;ConformanceToISOLevel-DefinitionallyConformant"/>
<cmns-av:adaptedFrom>ISO 11615:2017 Health informatics - Identification of medicinal products (IDMP) - Data elements and structures for the unique identification and exchange of regulated medicinal product information, clause 9.6.2.21.3</cmns-av:adaptedFrom>
<cmns-av:adaptedFrom rdf:datatype="&xsd;anyURI">http://purl.obolibrary.org/obo/PATO_000001595</cmns-av:adaptedFrom>
<cmns-av:synonym>width</cmns-av:synonym>
</owl:Class>

Expand Down

0 comments on commit 57ef748

Please sign in to comment.