full doxygen conversion #84
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| # This is a CI workflow for the fv3atm project. | |
| # | |
| # This workflow builds and tests the fv3atm library using GCC, and it tests | |
| # different CMake build options. | |
| # | |
| # Alex Richert, 6 Dec 2023 | |
| name: GCC | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| branches: | |
| - develop | |
| # Cancel in-progress workflows when pushing to a branch | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| GCC: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| cmake_opts: ["-D32BIT=ON", "-D32BIT=OFF"] | |
| gcc_ver: ["11"] | |
| mpi: ["mpich"] | |
| steps: | |
| - name: install-doxygen | |
| run: | | |
| sudo apt-get install doxygen graphviz | |
| - name: checkout-fv3atm | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ${{ github.workspace }}/fv3atm | |
| submodules: recursive | |
| - name: cache-spack | |
| id: cache-spack | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/spack-develop | |
| key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-2-${{ matrix.cmake_opts }}-${{ matrix.mpich }} | |
| # Building dependencies takes 40+ min | |
| - name: spack-install | |
| if: steps.cache-spack.outputs.cache-hit != 'true' | |
| run: | | |
| wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip | |
| unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env create gcc${{ matrix.gcc_ver }} ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml | |
| spack env activate gcc${{ matrix.gcc_ver }} | |
| spack compiler find | grep gcc@${{ matrix.gcc_ver }} | |
| spack external find gmake cmake git git-lfs perl python ${{ matrix.mpi }} | |
| spack config add "packages:all:require:['%gcc@${{ matrix.gcc_ver }}']" | |
| spack config add "packages:mpi:require:'${{ matrix.mpi }}'" | |
| spack concretize |& tee ${SPACK_ENV}/log.concretize | |
| spack install -j2 --fail-fast | |
| - name: build-fv3atm | |
| run: | | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env activate gcc${{ matrix.gcc_ver }} | |
| spack load $(spack find --format "{name}") | |
| cd ${GITHUB_WORKSPACE}/fv3atm | |
| git clone https://github.com/NOAA-EMC/CMakeModules | |
| git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo | |
| mkdir ${GITHUB_WORKSPACE}/build | |
| sed -i 's/doc /upp_doc /' upp/docs/CMakeLists.txt | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON ${{ matrix.cmake_opts }} -DENABLE_DOCS=ON | |
| make -j2 | |
| ls -l /home/runner/work/fv3atm/fv3atm/fv3atm/io | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: docs | |
| path: | | |
| build/docs/html | |
| - name: debug-artifacts | |
| uses: actions/upload-artifact@v3 | |
| if: ${{ failure() }} | |
| with: | |
| name: ccpp_prebuild_logs | |
| path: ${{ github.workspace }}/build/ccpp/ccpp_prebuild.* | |