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Ejh d7 #8

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Description

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Issue(s) addressed

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  • fixes #<issue_number>
  • fixes noaa-emc/fv3atm/issues/<issue_number>

Testing

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  • Will the code updates change regression test baseline? If yes, why? Please show the baseline directory below.
  • Please commit the regression test log files in your ufs-weather-model branch

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  • waiting on noaa-emc/nems/pull/<pr_number>
  • waiting on noaa-emc/fv3atm/pull/<pr_number>

edwardhartnett and others added 30 commits January 18, 2024 08:00
update write grid comp document
…m wrong for nests (NOAA-EMC#806)

* nesting fixes
1. Initialize hailwat index in dynamical core.
2. Use the correct tile number for nests in atmos_model.F90.

* remove unneeded write statements

* Fix kchunk3d in io/module_write_netcdf.F90

---------

Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov>
* Update atmos_cubed_sphere and add compile definition BYPASS_BREED_SLP_INLINE to dycore

* Pass correct mpi communicator type to post_alctvars routine in inline post
* Update github workflow. Update gcc to 12 and mpi to openmpi

* Add 'spack clean' to reduce the size of the cache files

* Split GCC.yml workflow into two jobs, build_spack and build_fv3atm

* Update github workflow. Add mpich

* Update github actions to v4

* Use action/cache/restore in build_fv3atm job

* update upp revision to 5faac75

* Update GCC.yml

---------

Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov>
…AA-EMC#816)

* update ccpp/framework

* fixed excessive evaporation when both innerloop=T and mraerosol=T

---------

Co-authored-by: Grant Firl <grant.firl@noaa.gov>
…OAA-EMC#826)

* Add model_configure option to specify history file output directory (fv3atm_output_dir)

* Update workflows/GCC.yml

* Move reading of 'fv3atm_output_dir' config option to module_wrt_grid_comp

* Update upp
* Remove -DUSE_COND and -DMOIST_CAPPA compiling flags for hydrostatic runs; Fix the issue to write out omga and geopotential height for inline post

* Add the conditions to calculate omega in post

* Update CMakeLists.txt

* revise conditions to calculate zint
…gfixes, sfcsub.F landmask bugfix, and canopy resistance output (NOAA-EMC#831)

* add rca when NOAH_MP is active

* fix type in GFS_typedefs.F90 for use_lake2m
…AA-EMC#807)

* In ccpp/data/GFS_typedefs.meta: change units 'flashes 5 min-1' to 'flashes min-1' and update long name to make clear this is per 5 minutes

* In ccpp/driver/GFS_diagnostics.F90, scale lightning threat from flashes per minute to flashes per 5 minutes to match diagnostic units

* Fix wrong long names for lightning threat indices in ccpp/data/GFS_typedefs.meta

* Remove invalid active attributes in ccpp/data/GFS_typedefs.meta

* Bug fix for GFDL-MP in CCPP: use correct allocation of variables but internally bend everything back to where it's expected (affects some, but not all variables in CCPP_typedefs.{F90,meta})

* Bug fix in ccpp/data/GFS_typedefs.meta: sncovr_ice is always allocated, remove active attribute

* Bug fix in ccpp/data/CCPP_typedefs.meta small-scale gravity wave drag variables are active for options 2,3,22,33 of gwd, not just 3,33

* Bug fix in ccpp/data/GFS_typedefs.meta: three variables are always allocated, remove active attribute

* More bug fixes for active attributes in ccpp/data/GFS_typedefs.meta

* More bug fixes for allocation dimensions in ccpp/data/CCPP_typedefs.*; optional arguments in stochastic_physics/stochastic_physics_wrapper.F90

* Set ccpp_data's thrd_cnt in ccpp/driver/CCPP_driver.F90

* No default in OMP pragmas in ccpp/driver/CCPP_driver.F90
* set up fhour with multiple values

* updates for diag time

* add fixes for two bucket

* Update fhzero global attribute at runtime

* Update to speed uo writing restart files

* allow fhzero to be non-integer

* Move ESMF_InfoBroadcast call outside ESMF_VMEpochEnter/ESMF_VMEpochExit section to avoid hanging

---------

Co-authored-by: Jun.Wang <Jun.Wang@noaa.gov>
Co-authored-by: Dusan Javic <dusan.javic@noaa.gov>
* Perturbation/increment file for cold starts: move the call to read_da_inc outside the if external_ic/restart logic.
…ut the nest grid corner locations (NOAA-EMC#847)

*  typo/bug in fv_grid_tools.F90 when print out the grid SW, NW, NE, SE CORNER indexes and lat/lon locations.
…similar to hydrostatic method (NOAA-EMC#849)

* Added new parameter, pass_full_omega_to_physics_in_non_hydrostatic_mode
* HR4 GWD update for files GFS_typedefs.F90 GFS_typedefs.meta

* update files GFS_typedefs.F90 GFS_typedefs.meta

* remove psl_ from files GFS_typedefs.F90 GFS_typedefs.meta

* HR4 Gravity Wave Drag Update

* update code GFS_typedefs.F90 for GWD and Noahmp HR4

* point to PR#549 of ccpp-framework

* retract the changes from the Noahmp model

---------

Co-authored-by: Grant Firl <grant.firl@noaa.gov>
Co-authored-by: Dustin Swales <dustin.swales@noaa.gov>
jkbk2004 and others added 5 commits July 16, 2024 09:06
* atmos_cubed_sphere - bug fix to address debug mode crashes caused by floating-point exception in subroutine a2b_ord2 in model/a2b_edge.F90
… in the GFS physics suite (NOAA-EMC#851)

* Output updraft value of convective cloud condensate in CCPP

* update xkinv1 to 0.15

* add check if progsigma is true

* address seg fault if progsigma=F

---------

Co-authored-by: Grant Firl <grant.firl@noaa.gov>
* Land surface upgrades for HR4
* Update diagnose_cplFields routine to use FieldBundleWrite. Needs esmf v8.6.0

* Fixed bug in aux2d dimensions for GFS meta file.

* Pass return code from diagnose_cplFields back to caller

* Skip 'cpl_scalars' field when dumping export state

* fix fhzero for GEFS

* fix cpl_scalars (#6)

* fix issues w/ cplscalars

* error out of all 3 spatial indices are not present

* add check for scalar_id = 0

* modify for timeslices and times (#7)
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