This repository contains the research compendium for our in-prep paper:
Eleanor E. Jackson, Patrick G. Cannon, Matthew P. Greenwell, Sofia Gripenberg. Density-dependent pre-dispersal seed predation and fruit set in a tropical tree: spatial scaling of plant-insect interactions.
The code/ directory contains two subdirectories:
exploration/ contains R Markdown notebook files that are used for exploratory analysis. They produce figures and explanatory documents. All .Rmd files in exploration/ are knitted to .md github_documents to make the GitHub repo browsable.
scripts/ contains action scripts, i.e. all the code for cleaning, combining, and analysing the data. Each .R script has a summary at the top of what it does. The scripts are numbered in the order in which they would typically be run.
The original data is stored in the data/raw/ subdirectory. Any data that is produced using code is stored in data/clean/. Data will be made available on publication of the research paper.
The output/ directory contains the subdirectories figures/ and results/, which contain the figures used in the paper and other output from analyses, respectively.
The docs/ directory contains the data dictionary (i.e. metadata), project notebook, protocols and any other relevant documents.