Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Updated libraries and README #2

Merged
merged 7 commits into from
Aug 19, 2020
Merged

Conversation

asboner
Copy link
Member

@asboner asboner commented Aug 18, 2020

For convenience I've left the code in (commented) for some of the tools until functional testing confirms that the image works as expected even with the distro version.
For samtools, I need the 1.9 version; hence I kept it as it was before.

@asboner asboner self-assigned this Aug 18, 2020
@asboner asboner linked an issue Aug 18, 2020 that may be closed by this pull request
@asboner asboner marked this pull request as ready for review August 19, 2020 00:07
@asboner
Copy link
Member Author

asboner commented Aug 19, 2020

I've also added the transformBAM.sh tool. Useful to change the IDs within a BAM file.

Copy link
Collaborator

@fernandezevn fernandezevn left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good. I wasn't aware of the pindel fix, so that's good to know!

@asboner
Copy link
Member Author

asboner commented Aug 19, 2020

The pindel fix was @kwe2001 addition

@asboner asboner merged commit cf51185 into main Aug 19, 2020
@asboner asboner deleted the 1-Missing-libraries-in-base-image branch August 19, 2020 14:06
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Missing libraries in base image
3 participants